RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 NFKBIDQ8NI38 313 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 SLC35B4Q969S0 331 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 THOC1Q96FV9 657 aaKnown RBP10.96□□□□□ -0.65
SS18-225ENST00000585121 ZNF607Q96SK3 696 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 NPHS2Q9NP85 383 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 SLC25A37Q9NYZ2 338 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 SLAMF8Q9P0V8 285 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 LEF1Q9UJU2 399 aaPredicted RBP10.96□□□□□ -0.65
SS18-225ENST00000585121 SLC13A4Q9UKG4 626 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 SLC9A8Q9Y2E8 581 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 NDUFAF1Q9Y375 327 aa10.96□□□□□ -0.65
SS18-225ENST00000585121 A0A0G2JND7 137 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 CIB4A0PJX0 185 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 PRORSD1PA6NEY8 169 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 CCT8L1PA6NM43 557 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 ANGPT2O15123 496 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 EDF1O60869 148 aaKnown RBP10.95□□□□□ -0.66
SS18-225ENST00000585121 CD3EP07766 207 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 ARAFP10398 606 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 IMPDH2P12268 514 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 HOXB9P17482 250 aaPredicted RBP10.95□□□□□ -0.66
SS18-225ENST00000585121 SLC6A2P23975 617 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 LOXP28300 417 aaPredicted RBP10.95□□□□□ -0.66
SS18-225ENST00000585121 PRKAR1BP31321 381 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 RIPPLY3P57055 190 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 ADAM8P78325 824 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 CDK6Q00534 326 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 CEACAM7Q14002 265 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 PPA1Q15181 289 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 OR7A5Q15622 319 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 TAB1Q15750 504 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 OTUD3Q5T2D3 398 aaPredicted RBP10.95□□□□□ -0.66
SS18-225ENST00000585121 CASP12Q6UXS9 341 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.95□□□□□ -0.66
SS18-225ENST00000585121 SERPINA11Q86U17 422 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 LRRC75A-AS1Q8N1F1 130 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 ASB6Q9NWX5 421 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 VAPAQ9P0L0 249 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.95□□□□□ -0.66
SS18-225ENST00000585121 ROS1P08922 2347 aa10.95□□□□□ -0.66
SS18-225ENST00000585121 ZC3H12DA2A288 527 aaKnown RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 HS3ST1O14792 307 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 CLOCKO15516 846 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TMCC2O75069 709 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 SERPINB7O75635 380 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 IGHV3-9P01782 118 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TROVE2P10155 538 aaKnown RBP eCLIP10.94□□□□□ -0.66
SS18-225ENST00000585121 PRG2P13727 222 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 H3F3AP84243 136 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 FOXD4Q12950 439 aaPredicted RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 SCARB2Q14108 478 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TIMM23BQ5SRD1 257 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TMEM225Q6GV28 225 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 MSRB3Q8IXL7 192 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 BHLHE22Q8NFJ8 381 aaPredicted RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 STK35Q8TDR2 534 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TSPEARQ8WU66 669 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TMEM171Q8WVE6 324 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 SF3B5Q9BWJ5 86 aaKnown RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 CXorf56Q9H5V9 222 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TMEM38AQ9H6F2 299 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 SLC52A3Q9NQ40 469 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 MRGBPQ9NV56 204 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 SELENONQ9NZV5 590 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 UPB1Q9UBR1 384 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 RNF115Q9Y4L5 304 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 GMEB1Q9Y692 573 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 VPS13CQ709C8 3753 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 LIPT2A6NK58 231 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 ELOA3DA6NLF2 546 aaPredicted RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 AKR7A3O95154 331 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 VAMP5O95183 116 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 AHSA1O95433 338 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 FOSL1P15407 271 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 COX5AP20674 150 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 IGHV1-2P23083 117 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 GTF2E2P29084 291 aaKnown RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 HOXC12P31275 282 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 NCALDP61601 193 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 BNIP2Q12982 314 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 SLC17A1Q14916 467 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 ELOA3BQ3SY89 546 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 NCMAPQ5T1S8 102 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 C1orf140Q5VVS0 124 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 METTL21CQ5VZV1 264 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 OR7E24Q6IFN5 339 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 DHRS4L2Q6PKH6 230 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 DHDDSQ86SQ9 333 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 GPAT4Q86UL3 456 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 ZNF433Q8N7K0 673 aaPredicted RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 ZNF611Q8N823 705 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 HIPK4Q8NE63 616 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 ELOA3Q8NG57 546 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 AKAP1Q92667 903 aaKnown RBP eCLIP10.94□□□□□ -0.66
SS18-225ENST00000585121 C3orf49Q96BT1 292 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 ZNF317Q96PQ6 595 aaPredicted RBP10.94□□□□□ -0.66
SS18-225ENST00000585121 TMEM204Q9BSN7 226 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 TRIM2Q9C040 744 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 PIF1Q9H611 641 aa10.94□□□□□ -0.66
SS18-225ENST00000585121 ADPRHL2Q9NX46 363 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms