RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 RPS6KB2Q9UBS0 482 aa17.19■□□□□ 0.34
SS18-208ENST00000577751 FBN2P35556 2912 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 LIPT2A6NK58 231 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 ZNF716A6NP11 495 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 M0R3H8 397 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 EIF1BO60739 113 aaKnown RBP17.18■□□□□ 0.34
SS18-208ENST00000577751 FMO6PO60774 539 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 POU2F1P14859 743 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 IDUAP35475 653 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 NUDT2P50583 147 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 SLC16A1P53985 500 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 TLE4Q04727 773 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 OR1Q1Q15612 314 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 NPTX1Q15818 432 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 ULK3Q6PHR2 472 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 PAQR6Q6TCH4 344 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 OR4D11Q8NGI4 311 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 LINC01560Q8TB33 94 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 SLC26A7Q8TE54 656 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 SLC38A4Q969I6 547 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 MCCC2Q9HCC0 563 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 DCHS2Q6V1P9 2916 aa17.18■□□□□ 0.34
SS18-208ENST00000577751 A0A0B4J2E0 115 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 A0A1B0GX12 115 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 ELOVL7A1L3X0 281 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 FAM221AA4D161 298 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 NME4O00746 187 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 RAMP1O60894 148 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 GPIP06744 558 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 PNMTP11086 282 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 EPXP11678 715 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 KDELR2P33947 212 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 UGT2B10P36537 528 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 SLC7A2P52569 658 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 NCALDP61601 193 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 CEACAM7Q14002 265 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 DAZAP2Q15038 168 aaPredicted RBP17.17■□□□□ 0.34
SS18-208ENST00000577751 FREM1Q5H8C1 2179 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 ALG10BQ5I7T1 473 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 C1orf140Q5VVS0 124 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 TFAP2EQ6VUC0 442 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 BEND4Q6ZU67 534 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 RANBP3LQ86VV4 465 aaPredicted RBP17.17■□□□□ 0.34
SS18-208ENST00000577751 CCDC103Q8IW40 242 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 MICU2Q8IYU8 434 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
SS18-208ENST00000577751 OR6T1Q8NGN1 323 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 PIGXQ8TBF5 258 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 SLC47A1Q96FL8 570 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 LRRC37BQ96QE4 947 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 C12orf49Q9H741 205 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 TMEM27Q9HBJ8 222 aa17.17■□□□□ 0.34
SS18-208ENST00000577751 GMPR2Q9P2T1 348 aaKnown RBP17.17■□□□□ 0.34
SS18-208ENST00000577751 ANKHD1Q8IWZ3 2542 aaKnown RBP17.16■□□□□ 0.34
SS18-208ENST00000577751 A0A087WUJ7 227 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 ELOA3DA6NLF2 546 aaPredicted RBP17.16■□□□□ 0.34
SS18-208ENST00000577751 FTCDNL1E5RQL4 147 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 SHOX2O60902 331 aaPredicted RBP17.16■□□□□ 0.34
SS18-208ENST00000577751 FZD7O75084 574 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 DCTN3O75935 186 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 FAM107AO95990 144 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 LIPEQ05469 1076 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 OR7A5Q15622 319 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 ELOA3BQ3SY89 546 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 ZNF613Q6PF04 617 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 C5orf46Q6UWT4 87 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 STK32CQ86UX6 486 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 ELOA3Q8NG57 546 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 DACH2Q96NX9 599 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 MCHR1Q99705 422 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 NAA11Q9BSU3 229 aaPredicted RBP17.16■□□□□ 0.34
SS18-208ENST00000577751 PTDSS2Q9BVG9 487 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 PCDHAC1Q9H158 963 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 ABCD2Q9UBJ2 740 aa17.16■□□□□ 0.34
SS18-208ENST00000577751 APCP25054 2843 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 IGKV1D-42A0A075B6H8 117 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 C16orf97H3BN30 126 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 NDUFAB1O14561 156 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 IFNA14P01570 189 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 CCKARP32238 428 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 OR3A2P47893 321 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 EXOC3L2Q2M3D2 409 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 SWT1Q5T5J6 900 aaKnown RBP17.15■□□□□ 0.34
SS18-208ENST00000577751 LINC00114Q6XXX2 140 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 STAC2Q6ZMT1 411 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 RBM45Q8IUH3 476 aaKnown RBP17.15■□□□□ 0.34
SS18-208ENST00000577751 GABRG1Q8N1C3 465 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 TMEM99Q8N816 258 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 MFSD8Q8NHS3 518 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 ZNF775Q96BV0 537 aaPredicted RBP17.15■□□□□ 0.34
SS18-208ENST00000577751 ALG2Q9H553 416 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 NDRG3Q9UGV2 375 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 BAG5Q9UL15 447 aa17.15■□□□□ 0.34
SS18-208ENST00000577751 SH3D21A4FU49 640 aa17.14■□□□□ 0.33
SS18-208ENST00000577751 AQP7P3A6NL99 342 aa17.14■□□□□ 0.33
SS18-208ENST00000577751 GPR171O14626 319 aa17.14■□□□□ 0.33
SS18-208ENST00000577751 CTAG2O75638 210 aa17.14■□□□□ 0.33
SS18-208ENST00000577751 AKR7A3O95154 331 aa17.14■□□□□ 0.33
SS18-208ENST00000577751 AHSA1O95433 338 aa17.14■□□□□ 0.33
SS18-208ENST00000577751 NTF4P34130 210 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms