RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 LRRC28Q86X40 367 aaPredicted RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 C17orf82Q86X59 251 aaPredicted RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 ZNF440Q8IYI8 595 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 MS4A15Q8N5U1 240 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 RFLNBQ8N5W9 214 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 POMGNT2Q8NAT1 580 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 DUSP18Q8NEJ0 188 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 OR2T27Q8NH04 317 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 GHSRQ92847 366 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 C3orf49Q96BT1 292 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 RNF31Q96EP0 1072 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 PELOQ9BRX2 385 aaKnown RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 CYSLTR2Q9NS75 346 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 EXTL2Q9UBQ6 330 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 PRODH2Q9UF12 536 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 ST6GALNAC2Q9UJ37 374 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 RBMX2Q9Y388 322 aaKnown RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 ADAM18Q9Y3Q7 739 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 TDRD6O60522 2096 aaKnown RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 A0A0G2JK05 382 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 A0A1W2PR77 199 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 FITM1A5D6W6 292 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 ARPC3O15145 178 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 OGG1O15527 345 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 HYAL3O43820 417 aaPredicted RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 CD27P26842 260 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 CD38P28907 300 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 HCCSP53701 268 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 GFERP55789 205 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 OR10A3P58181 314 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 IFITM2Q01629 132 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 SERTAD2Q14140 314 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 ISXQ2M1V0 245 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 TBRG1Q3YBR2 411 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 TCTE1Q5JU00 501 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 MZT2BQ6NZ67 158 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 SYS1Q8N2H4 156 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 DEFB119Q8N690 84 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 NPEPL1Q8NDH3 523 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 FAM71CQ8NEG0 241 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 RELTQ969Z4 430 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 TGM7Q96PF1 710 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 CCNL2Q96S94 520 aaPredicted RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 CNN2Q99439 309 aaKnown RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 DDOQ99489 341 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 TTYH2Q9BSA4 534 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 SLC19A3Q9BZV2 496 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 CHRNA10Q9GZZ6 450 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 SPRTNQ9H040 489 aaPredicted RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 SLC2A4RGQ9NR83 387 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 SOHLH2Q9NX45 425 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 RASD1Q9Y272 281 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 ZNF337Q9Y3M9 751 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 BRWD1Q9NSI6 2320 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 TLCD2A6NGC4 264 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 C17orf105B2RV13 164 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 LYRM1O43325 122 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 OR7A10O76100 309 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 PRKAR1AP10644 381 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 CD1CP29017 333 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 RPL4P36578 427 aaKnown RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 ADH7P40394 386 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 PPM1FP49593 454 aaPredicted RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 DIO1P49895 249 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 RPS4XP62701 263 aaKnown RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 ACTA2P62736 377 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 ACTG2P63267 376 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 LGALS3BPQ08380 585 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 BIKQ13323 160 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 PON3Q15166 354 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 SF3A2Q15428 464 aaKnown RBP9.23□□□□□ -0.93
VPS53-220ENST00000576149 TP53I3Q53FA7 332 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 FNDC7Q5VTL7 733 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 PLET1Q6UQ28 207 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 MED25Q71SY5 747 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 ZNF687Q8N1G0 1237 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 OR7G1Q8NGA0 311 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 OR51L1Q8NGJ5 315 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 ZNRF4Q8WWF5 429 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 SLC7A6Q92536 515 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 PELI1Q96FA3 418 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 LMF1Q96S06 567 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 OR2B2Q9GZK3 357 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 PDE7BQ9NP56 450 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 NRIP3Q9NQ35 241 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 GTF2A1LQ9UNN4 478 aa9.23□□□□□ -0.93
VPS53-220ENST00000576149 CACNA1IQ9P0X4 2223 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 IGKV1D-42A0A075B6H8 117 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 A0A0G2JMP0 313 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 A0A0X1KG70 313 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 METTL12A8MUP2 240 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 SERPINA3P01011 423 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 EIF4EP06730 217 aaKnown RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 SRFP11831 508 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 HLA-DMAP28067 261 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 SF3B4Q15427 424 aaKnown RBP eCLIP9.22□□□□□ -0.935e-6■■■■■ 28.2
VPS53-220ENST00000576149 CDONQ4KMG0 1287 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 ANKRD39Q53RE8 183 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 IL20RBQ6UXL0 311 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 SAMD12Q8N8I0 201 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms