RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LPAR4Q99677 370 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 MRPL37Q9BZE1 423 aaKnown RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 SLC25A51Q9H1U9 297 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 BLZF1Q9H2G9 400 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 MRPL22Q9NWU5 206 aaKnown RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 SLC7A8Q9UHI5 535 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 ANAPC7Q9UJX3 599 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 ELF5Q9UKW6 265 aaPredicted RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 PPP2R2CQ9Y2T4 447 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 PRG3Q9Y2Y8 225 aaPredicted RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 WIPI2Q9Y4P8 454 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 TIMM10BQ9Y5J6 103 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 NPTNQ9Y639 398 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 MAD1L1Q9Y6D9 718 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 NEDD4P46934 1319 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 UBR4Q5T4S7 5183 aa4.96□□□□□ -1.61
VPS53-219ENST00000576019 IGLV5-37A0A075B6J1 123 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PPIAL4EA0A075B759 164 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 A0A087X1B8 175 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 A0A0J9YVX5 310 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 LOC100653049A0A140TA62 436 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 A8MU76 341 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 C9JVG2 144 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 CDK2AP2O75956 126 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 KRT34O76011 436 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 DFFBO76075 338 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 FGF19O95750 216 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 FTH1P02794 183 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 OPN1LWP04000 364 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 CRYGCP07315 174 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 FAM157CP0CG43 387 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PPIAL4FP0DN26 164 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 TNNI1P19237 187 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 TBXA2RP21731 343 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 U2AF2P26368 475 aaKnown RBP eCLIP4.96□□□□□ -1.62
VPS53-219ENST00000576019 FEN1P39748 380 aaKnown RBP4.96□□□□□ -1.62
VPS53-219ENST00000576019 RGS8P57771 180 aaPredicted RBP4.96□□□□□ -1.62
VPS53-219ENST00000576019 DLG1Q12959 904 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 BNIP1Q12981 228 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PEX6Q13608 980 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 RUNX3Q13761 415 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 MESDQ14696 234 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 SYCP1Q15431 976 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 MICBQ29980 383 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 ACCSLQ4AC99 568 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 XKR6Q5GH73 641 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 ATP1A1-AS1Q5TC04 95 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 TMEM53Q6P2H8 277 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 Q6ZVQ6 151 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 KCTD8Q6ZWB6 473 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 SERPINA9Q86WD7 417 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 TCAIMQ8N3R3 496 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 FAM89BQ8N5H3 189 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 POC1AQ8NBT0 407 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 TMEM158Q8WZ71 300 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PNPLA2Q96AD5 504 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PRRC1Q96M27 445 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 DUX5Q96PT3 197 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 GAL3ST1Q99999 423 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 TRIM62Q9BVG3 475 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 NRN1Q9NPD7 142 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PXMP2Q9NR77 195 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 SLC17A5Q9NRA2 495 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PTTG3PQ9NZH4 202 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 KLRF1Q9NZS2 232 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 PEF1Q9UBV8 284 aaKnown RBP4.96□□□□□ -1.62
VPS53-219ENST00000576019 VANGL2Q9ULK5 521 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 SLC9A8Q9Y2E8 581 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 CSDC2Q9Y534 153 aaKnown RBP4.96□□□□□ -1.62
VPS53-219ENST00000576019 PPIAL4AQ9Y536 164 aa4.96□□□□□ -1.62
VPS53-219ENST00000576019 ARID2Q68CP9 1835 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 DIDO1Q9BTC0 2240 aaKnown RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 LOC390937A0A1W2PQ73 354 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 LRP5LA4QPB2 252 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 GABRR3A8MPY1 467 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 WWP2O00308 870 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 OR7A17O14581 309 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 IVLP07476 585 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 ATP1B2P14415 290 aaPredicted RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 ANXA13P27216 316 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 PPP2R1BP30154 601 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 ID1P41134 155 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 NAMPTP43490 491 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 XIAPP98170 497 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 OC90Q02509 493 aaPredicted RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 BST2Q10589 180 aaKnown RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 GPR17Q13304 367 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 CUL1Q13616 776 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 TEAD2Q15562 447 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 TGIF1Q15583 401 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 CHRNA6Q15825 494 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 FAM106AQ4KMX7 169 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 NKAIN1Q4KMZ8 207 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 SBK1Q52WX2 424 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 LCE4AQ5TA78 99 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 PLCXD3Q63HM9 321 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 LEG1Q6P5S2 330 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 BHLHB9Q6PI77 547 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 TMEM220Q6QAJ8 160 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 COLCA1Q6ZS62 124 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms