RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OR10S1Q8NGN2 331 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 TMEM45BQ96B21 275 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 SHCBP1LQ9BZQ2 653 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 TRIM5Q9C035 493 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 CRLF2Q9HC73 371 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 NPHS2Q9NP85 383 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 EQTNQ9NQ60 294 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 NKIRAS2Q9NYR9 191 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 CARD8Q9Y2G2 431 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 MTO1Q9Y2Z2 717 aaKnown RBP13.66□□□□□ -0.22
VPS53-218ENST00000575207 C17orf100A8MU93 164 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 MYO1GB0I1T2 1018 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 PMS2P2O95744 297 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 STMN1P16949 149 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 ARR3P36575 388 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 MGAT5Q09328 741 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 PCGF3Q3KNV8 242 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 VPS26BQ4G0F5 336 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 TIGD2Q4W5G0 525 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 HP1BP3Q5SSJ5 553 aaPredicted RBP13.65□□□□□ -0.22
VPS53-218ENST00000575207 OR6Y1Q8NGX8 325 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 SSMEM1Q8WWF3 244 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 QRSL1Q9H0R6 528 aaKnown RBP13.65□□□□□ -0.22
VPS53-218ENST00000575207 ACSS3Q9H6R3 686 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 UBAP1Q9NZ09 502 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 FRAS1Q86XX4 4008 aa13.65□□□□□ -0.22
VPS53-218ENST00000575207 A8MXK9 166 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 KCNK2O95069 426 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 F13BP05160 661 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 HEPACAMQ14CZ8 416 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 QPRTQ15274 297 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 HFEQ30201 348 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 TTC27Q6P3X3 843 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 SLC25A43Q8WUT9 341 aaPredicted RBP13.64□□□□□ -0.23
VPS53-218ENST00000575207 ATP6V1E2Q96A05 226 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 LRRC39Q96DD0 335 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 ELP4Q96EB1 424 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 ELOVL6Q9H5J4 265 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 SERINC1Q9NRX5 453 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 CHMP2BQ9UQN3 213 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 CACNG2Q9Y698 323 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 DSPPQ9NZW4 1301 aa13.64□□□□□ -0.23
VPS53-218ENST00000575207 A0A096LPE4 126 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 A0A1W2PPZ6 126 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 RBMY1BA6NDE4 496 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 RBMY1EA6NEQ0 496 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 SKAP2O75563 359 aaPredicted RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 TSPAN9O75954 239 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 ZNF432O94892 652 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 RBMY1DP0C7P1 496 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 BPIFB3P59826 476 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 EGR3Q06889 387 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 ILF2Q12905 390 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 FRG1Q14331 258 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 SLC17A1Q14916 467 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 PFKFB4Q16877 469 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 GLIPR1L2Q4G1C9 344 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 STEAP4Q687X5 459 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 BRD3OSQ6XYD6 125 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 ITPKCQ96DU7 683 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 AURKBQ96GD4 344 aaPredicted RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 LAT2Q9GZY6 243 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 VPS11Q9H270 941 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 NOL11Q9H8H0 719 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 FARSBQ9NSD9 589 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 NMRK1Q9NWW6 199 aa13.63□□□□□ -0.23
VPS53-218ENST00000575207 HUWE1Q7Z6Z7 4374 aaKnown RBP13.63□□□□□ -0.23
VPS53-218ENST00000575207 SYCE1LA8MT33 242 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 OR7A17O14581 309 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 KRT33AO76009 404 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 IFI6P09912 130 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 TFPIP10646 304 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 GFAPP14136 432 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 ELK3P41970 407 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 SLC6A9P48067 706 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 NPRL3Q12980 569 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 FXNQ16595 210 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 KLHL26Q53HC5 615 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 DMRTC1Q5HYR2 192 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 PAQR6Q6TCH4 344 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 USP51Q70EK9 711 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 ZIC4Q8N9L1 334 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 OR4S1Q8NGB4 309 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 OR5W2Q8NH69 310 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 TBC1D15Q8TC07 691 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 ADAMTS15Q8TE58 950 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 CFHR4Q92496 578 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 NMRAL1Q9HBL8 299 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 HINT3Q9NQE9 182 aaKnown RBP13.62□□□□□ -0.23
VPS53-218ENST00000575207 NSMCE4AQ9NXX6 385 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 DUSP13Q9UII6 198 aa13.62□□□□□ -0.23
VPS53-218ENST00000575207 GNG14A0A1W2PPG7 69 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 A0A1W2PPW3 197 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 ISPDA4D126 451 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 ZNF587BE7ETH6 402 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 H3BNH8 94 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 GTPBP1O00178 669 aaKnown RBP13.61□□□□□ -0.23
VPS53-218ENST00000575207 ZNF35P13682 527 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 CCNG1P51959 295 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 ALDH18A1P54886 795 aaKnown RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms