RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SMAD5Q99717 465 aaKnown RBP12.37□□□□□ -0.43
CCDC40-209ENST00000573474 PTDSS2Q9BVG9 487 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 HES7Q9BYE0 225 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 YTHDF1Q9BYJ9 559 aaKnown RBP12.37□□□□□ -0.43
CCDC40-209ENST00000573474 FKRPQ9H9S5 495 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 MCCC2Q9HCC0 563 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 KLHL1Q9NR64 748 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 IMPAD1Q9NX62 359 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 B4GALT7Q9UBV7 327 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF229Q9UJW7 825 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 TRAV27A0A087WT01 109 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 LRRN3E7EW58 273 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 MPZL2O60487 215 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 RFPL3SP0C7P2 107 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 ASAH2BP0C7U1 165 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF17P17021 662 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 TCEA1P23193 301 aaKnown RBP12.36□□□□□ -0.43
CCDC40-209ENST00000573474 ELK4P28324 431 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 CLK1P49759 484 aaKnown RBP12.36□□□□□ -0.43
CCDC40-209ENST00000573474 TNFSF10P50591 281 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 FXYD6P3P58550 94 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 PRPS1P60891 318 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 FOXK1P85037 733 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 TLE3Q04726 772 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 CD47Q08722 323 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 SELENBP1Q13228 472 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 CDK5R2Q13319 367 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 FHL1Q13642 323 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 MFSD13AQ14CX5 517 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 MAD2L1BPQ15013 274 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-209ENST00000573474 TOMM20Q15388 145 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 CLEC12AQ5QGZ9 265 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 FAM69AQ5T7M9 428 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 C1QL3Q5VWW1 255 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 ACSM5Q6NUN0 579 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 C3orf33Q6P1S2 294 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 CASP12Q6UXS9 341 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 LRRC69Q6ZNQ3 347 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 PTCHD4Q6ZW05 846 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 MAMDC2Q7Z304 686 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-209ENST00000573474 GALNTL5Q7Z4T8 443 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 ENTHD1Q8IYW4 607 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 IQCF1Q8N6M8 205 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 ATP6V1C2Q8NEY4 427 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 OR2T33Q8NG76 320 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 OR5M1Q8NGP8 315 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 RHOXF1Q8NHV9 184 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 SLC25A43Q8WUT9 341 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-209ENST00000573474 TRUB1Q8WWH5 349 aaKnown RBP12.36□□□□□ -0.43
CCDC40-209ENST00000573474 MOGAT1Q96PD6 335 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 PIGQQ9BRB3 760 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 PRRG3Q9BZD7 231 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 OR2B2Q9GZK3 357 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 OR11A1Q9GZK7 315 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 UBQLN3Q9H347 655 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 RNF6Q9Y252 685 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 RPH3AQ9Y2J0 694 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-209ENST00000573474 PCNX3Q9H6A9 2034 aa12.36□□□□□ -0.43
CCDC40-209ENST00000573474 SPTBN4Q9H254 2564 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 OR2M5A3KFT3 312 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 MAGEA13PA6NCF6 341 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 K7ENP7 123 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 TRAPPC6AO75865 159 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 NDUFB2O95178 105 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 TNFAIP8O95379 198 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 HMGN1P05114 100 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 TFPIP10646 304 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 IL11P20809 199 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 GDF1P27539 372 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 SLC6A6P31641 620 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 IDUAP35475 653 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 MEOX1P50221 254 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 UCNP55089 124 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 RPS4XP62701 263 aaKnown RBP12.35□□□□□ -0.43
CCDC40-209ENST00000573474 MYBPC1Q00872 1141 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 PLGLB1Q02325 96 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 CTU2Q2VPK5 515 aaKnown RBP12.35□□□□□ -0.43
CCDC40-209ENST00000573474 PGGHGQ32M88 737 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 SYT14P1Q58G82 188 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 C6orf141Q5SZD1 244 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 RAET1LQ5VY80 246 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 INO80CQ6PI98 192 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF786Q8N393 782 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 OR14L1PQ8NHC6 308 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 MFSD8Q8NHS3 518 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 TM9SF4Q92544 642 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 HDAC2Q92769 488 aaKnown RBP12.35□□□□□ -0.43
CCDC40-209ENST00000573474 UBE2FQ969M7 185 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 SLC25A36Q96CQ1 311 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 DCBLD2Q96PD2 775 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 SLC38A2Q96QD8 506 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 IFT27Q9BW83 186 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 NDEL1Q9GZM8 345 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 RASSF1Q9NS23 344 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF226Q9NYT6 803 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 TVP23BQ9NYZ1 205 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 BAIAP2Q9UQB8 552 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 MYRFQ9Y2G1 1151 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 HIF3AQ9Y2N7 669 aa12.35□□□□□ -0.43
CCDC40-209ENST00000573474 PCDHGA9Q9Y5G4 932 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms