RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ZNF780AO75290 641 aaPredicted RBP20.89■□□□□ 0.93
VPS53-211ENST00000571805 CD1AP06126 327 aa20.89■□□□□ 0.93
VPS53-211ENST00000571805 HHEXQ03014 270 aa20.89■□□□□ 0.93
VPS53-211ENST00000571805 DPY19L2P2Q6ZN68 376 aa20.89■□□□□ 0.93
VPS53-211ENST00000571805 KRT74Q7RTS7 529 aa20.89■□□□□ 0.93
VPS53-211ENST00000571805 AVL9Q8NBF6 648 aa20.89■□□□□ 0.93
VPS53-211ENST00000571805 OR4C3Q8NH37 302 aa20.89■□□□□ 0.93
VPS53-211ENST00000571805 EFCAB7A8K855 629 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 PRAMEF26H0Y7S4 382 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 IMPA2O14732 288 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 CDC123O75794 336 aaPredicted RBP20.88■□□□□ 0.93
VPS53-211ENST00000571805 UBL3O95164 117 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 RNH1P13489 461 aaKnown RBP20.88■□□□□ 0.93
VPS53-211ENST00000571805 ZNF267Q14586 743 aaPredicted RBP20.88■□□□□ 0.93
VPS53-211ENST00000571805 C1QTNF12Q5T7M4 302 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 RPL22L1Q6P5R6 122 aaKnown RBP20.88■□□□□ 0.93
VPS53-211ENST00000571805 CMIPQ8IY22 773 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 CLEC4AQ9UMR7 237 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 COPS3Q9UNS2 423 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 FLRT2O43155 660 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 AKR7A2O43488 359 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 ARL6IP5O75915 188 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 GPR3P46089 330 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 MMP15P51511 669 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 C1orf61Q13536 156 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 ERV3-1Q14264 604 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 PON3Q15166 354 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 BCL2L15Q5TBC7 163 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 C19orf47Q8N9M1 422 aaKnown RBP20.88■□□□□ 0.93
VPS53-211ENST00000571805 DEDD2Q8WXF8 326 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 SCMH1Q96GD3 660 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 NMNAT3Q96T66 252 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 G6PC3Q9BUM1 346 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 NMNAT2Q9BZQ4 307 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 Q9N2J8 555 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 NCDNQ9UBB6 729 aa20.88■□□□□ 0.93
VPS53-211ENST00000571805 SPTY2D1-AS1A0A0U1RR47 76 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 C7orf66A4D0T2 115 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 OR2W5A6NFC9 320 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 GATBO75879 557 aaKnown RBP20.87■□□□□ 0.93
VPS53-211ENST00000571805 ALX3O95076 343 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 BTG2P78543 158 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 NNATQ16517 81 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 ARMC6Q6NXE6 501 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 ZPLD1Q8TCW7 415 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 SNX33Q8WV41 574 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 GHITMQ9H3K2 345 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 NRIP3Q9NQ35 241 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 GNG8Q9UK08 70 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 TRBV2A0A0J9YWF9 115 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 OR6C68A6NDL8 312 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 SERINC4A6NH21 518 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 ARPC3O15145 178 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 CSTAP01040 98 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 CD3GP09693 182 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 ZNF24P17028 368 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 RPL4P36578 427 aaKnown RBP20.87■□□□□ 0.93
VPS53-211ENST00000571805 DGCR2P98153 550 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 MAT1AQ00266 395 aaKnown RBP20.87■□□□□ 0.93
VPS53-211ENST00000571805 FZD2Q14332 565 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 GXYLT1Q4G148 440 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 LYPD4Q6UWN0 246 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 UNQ9370/PRO34162Q6UXP9 181 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 OVCH1Q7RTY7 1134 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 SLITRK4Q8IW52 837 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 BCORP1Q8N888 145 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 OR14A2Q96R54 314 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 BRD7Q9NPI1 651 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 SPTBP11277 2137 aa20.87■□□□□ 0.93
VPS53-211ENST00000571805 TDRD6O60522 2096 aaKnown RBP20.86■□□□□ 0.93
VPS53-211ENST00000571805 ARHGEF9O43307 516 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 SELENOFO60613 162 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 PRAMEF2O60811 474 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 PPM1BO75688 479 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 PRKCAP17252 672 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 SPI1P17947 270 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 LBX1P52954 281 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 PSMD4P55036 377 aaKnown RBP20.86■□□□□ 0.93
VPS53-211ENST00000571805 LGALS3BPQ08380 585 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 FCN2Q15485 313 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 BTBD16Q32M84 506 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 FAM205BPQ63HN1 556 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 THOC7Q6I9Y2 204 aaKnown RBP20.86■□□□□ 0.93
VPS53-211ENST00000571805 ZNF595Q8IYB9 648 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 GHDCQ8N2G8 530 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 C16orf52Q8NHV5 167 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 HMGB4Q8WW32 186 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 C3orf49Q96BT1 292 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 SMAD5Q99717 465 aaKnown RBP20.86■□□□□ 0.93
VPS53-211ENST00000571805 PDCD1LG2Q9BQ51 273 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 NDEL1Q9GZM8 345 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 NUDT15Q9NV35 164 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 TRAV6A0A075B6T7 132 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 MRPL28Q13084 256 aaKnown RBP20.86■□□□□ 0.93
VPS53-211ENST00000571805 CCDC58Q4VC31 144 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 TOMM5Q8N4H5 51 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 DPAGT1Q9H3H5 408 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 PRTFDC1Q9NRG1 225 aa20.86■□□□□ 0.93
VPS53-211ENST00000571805 AK6Q9Y3D8 172 aaKnown RBP20.86■□□□□ 0.93
VPS53-211ENST00000571805 ZNF337Q9Y3M9 751 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms