RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 HTR3EA5X5Y0 456 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 MBD3L4A6NDZ8 208 aaPredicted RBP18.46■□□□□ 0.55
VPS53-210ENST00000571456 MBD3L3A6NE82 208 aaPredicted RBP18.46■□□□□ 0.55
VPS53-210ENST00000571456 MBD3L5A6NJ08 208 aaPredicted RBP18.46■□□□□ 0.55
VPS53-210ENST00000571456 CLCA1A8K7I4 914 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 TPST2O60704 377 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 SYNGR4O95473 234 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 PMS2P2O95744 297 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 IL11P20809 199 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 SFTPDP35247 375 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 EIF1AXP47813 144 aaKnown RBP18.46■□□□□ 0.55
VPS53-210ENST00000571456 CARD18P57730 90 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 HOXC5Q00444 222 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 NPTX1Q15818 432 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 RTL6Q6ICC9 239 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 TMPPEQ6ZT21 453 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 OR10D3Q8NH80 312 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 MBD3L2Q8NHZ7 208 aaPredicted RBP18.46■□□□□ 0.55
VPS53-210ENST00000571456 PRRC1Q96M27 445 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 LRGUKQ96M69 825 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 TRIB1Q96RU8 372 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 EPYCQ99645 322 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 TMEM43Q9BTV4 400 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 SLC19A3Q9BZV2 496 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 TMEM185BQ9H7F4 350 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 GLRX2Q9NS18 164 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 CLCF1Q9UBD9 225 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 KIAA1549Q9HCM3 1950 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 SLC22A20A6NK97 555 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 OR2T1O43869 369 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 EIF1BO60739 113 aaKnown RBP18.45■□□□□ 0.54
VPS53-210ENST00000571456 IL2RAP01589 272 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 CRHP06850 196 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 TFPIP10646 304 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 CD99P14209 185 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 TAS2R41P59536 307 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 ST3GAL3Q11203 375 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 MFSD13AQ14CX5 517 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 POMZP3Q6PJE2 187 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 XKRXQ6PP77 449 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 YTHDF3Q7Z739 585 aaKnown RBP18.45■□□□□ 0.54
VPS53-210ENST00000571456 SLC43A2Q8N370 569 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 OR4D11Q8NGI4 311 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 OR6S1Q8NH40 331 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 RND1Q92730 232 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 OSTF1Q92882 214 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 OR5B2Q96R09 309 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 CADM1Q9BY67 442 aaKnown RBP18.45■□□□□ 0.54
VPS53-210ENST00000571456 GP6Q9HCN6 339 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 COQ3Q9NZJ6 369 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 SH3BGRL2Q9UJC5 107 aa18.45■□□□□ 0.54
VPS53-210ENST00000571456 FAM32AQ9Y421 112 aaKnown RBP18.45■□□□□ 0.54
VPS53-210ENST00000571456 TMEM72A0PK05 275 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 AQP12BA6NM10 295 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 HSPB2A8KAH6 182 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 SULT2B1O00204 365 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 TNFSF11O14788 317 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 ZNHIT1O43257 154 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 NPIPB7O75200 414 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 PDE5AO76074 875 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 MSX2P35548 267 aaPredicted RBP18.44■□□□□ 0.54
VPS53-210ENST00000571456 RBM34P42696 430 aaKnown RBP18.44■□□□□ 0.54
VPS53-210ENST00000571456 OR1E2P47887 323 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 SLC35A1P78382 337 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 HSPB2Q16082 182 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 LINC00114Q6XXX2 140 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 DEF8Q6ZN54 512 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 P4HA3Q7Z4N8 544 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 VTCN1Q7Z7D3 282 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 AQP12AQ8IXF9 295 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 ATP6V1C2Q8NEY4 427 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 ASB5Q8WWX0 329 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 HS6ST2Q96MM7 605 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 WFDC6Q9BQY6 131 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 TACO1Q9BSH4 297 aaKnown RBP18.44■□□□□ 0.54
VPS53-210ENST00000571456 TMUB1Q9BVT8 246 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 ANKRD19PQ9H560 264 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 MAGIXQ9H6Y5 334 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 COQ10BQ9H8M1 238 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 MCCC2Q9HCC0 563 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 ENPP4Q9Y6X5 453 aa18.44■□□□□ 0.54
VPS53-210ENST00000571456 PRRC2AP48634 2157 aaKnown RBP18.44■□□□□ 0.54
VPS53-210ENST00000571456 MED12LQ86YW9 2145 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 CPSF4LA6NMK7 179 aaKnown RBP18.43■□□□□ 0.54
VPS53-210ENST00000571456 PRKD3O94806 890 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 RCBTB2O95199 551 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 AHSA1O95433 338 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 IGF2P01344 180 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 GPIP06744 558 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 GLI4P10075 376 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 UMPSP11172 480 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 CEACAM8P31997 349 aaPredicted RBP18.43■□□□□ 0.54
VPS53-210ENST00000571456 IDUAP35475 653 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 DIO1P49895 249 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 CDH12P55289 794 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 TLE4Q04727 773 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 MYBPHQ13203 477 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 PON3Q15166 354 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 RNPS1Q15287 305 aaKnown RBP18.43■□□□□ 0.54
VPS53-210ENST00000571456 RBM45Q8IUH3 476 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms