RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PIKFYVEQ9Y2I7 2098 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 A0A0G2JN53 185 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 A6NIZ1 184 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 HCRTR1O43613 425 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 ANGPTL7O43827 346 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 IGKV1D-16P01601 117 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 CHTF8P0CG12 524 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 HPGDP15428 266 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 POLR2EP19388 210 aaKnown RBP1.46□□□□□ -2.18
VPS35-207ENST00000568191 PAX7P23759 505 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 NPY1RP25929 384 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 GDI1P31150 447 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 OTX2P32243 289 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 HPCAL1P37235 193 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 ASMTP46597 345 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 RAP1BP61224 184 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 GGTA1PQ4G0N0 100 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 LY6G6FQ5SQ64 297 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 CTRB2Q6GPI1 263 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 CBLN3Q6UW01 205 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 TMIGD1Q6UXZ0 262 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 C19orf35Q6ZS72 473 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 NEGR1Q7Z3B1 354 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 LRRC43Q8N309 656 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 SVOPLQ8N434 492 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 ARL10Q8N8L6 244 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 ZNF709Q8N972 641 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 FANK1Q8TC84 345 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 BRSK1Q8TDC3 778 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 MCOLN3Q8TDD5 553 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 RAPGEF5Q92565 580 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 FGF11Q92914 225 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 C14orf79Q96F83 325 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 ZNF641Q96N77 438 aaPredicted RBP1.46□□□□□ -2.18
VPS35-207ENST00000568191 NPAS2Q99743 824 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 MRPL13Q9BYD1 178 aaKnown RBP1.46□□□□□ -2.18
VPS35-207ENST00000568191 KRT23Q9C075 422 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 SMYD3Q9H7B4 428 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 DMAP1Q9NPF5 467 aaPredicted RBP1.46□□□□□ -2.18
VPS35-207ENST00000568191 AIPL1Q9NZN9 384 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 GNPTGQ9UJJ9 305 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 YTHDF2Q9Y5A9 579 aaKnown RBP1.46□□□□□ -2.18
VPS35-207ENST00000568191 V9GY05 133 aa1.46□□□□□ -2.18
VPS35-207ENST00000568191 CLSPNQ9HAW4 1339 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 PLA2R1Q13018 1463 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 IGHV2-70DA0A0C4DH43 119 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 RNF103-CHMP3A0A140T963 221 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 A0A1B0GUS0 222 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 E9PBE3 544 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 RASGRF2O14827 1237 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 CTAGE5O15320 804 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 MBTPS2O43462 519 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 OR1F1O43749 312 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 TPST2O60704 377 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 SCGB2A1O75556 95 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 RCBTB2O95199 551 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 TRIM16O95361 564 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 OPN1MWP04001 364 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 DCNP07585 359 aaKnown RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 OPN1MW2P0DN77 364 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 OPN1MW3P0DN78 364 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 CXCR2P25025 360 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 YWHABP31946 246 aaKnown RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 GLP1RP43220 463 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 NAPAP54920 295 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 IL1RL1Q01638 556 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 ENPEPQ07075 957 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 PJVKQ0ZLH3 352 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 MXD4Q14582 209 aaPredicted RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 RSPO1Q2MKA7 263 aaPredicted RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 BCL7AQ4VC05 210 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 TP53I3Q53FA7 332 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 ZNF311Q5JNZ3 666 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 TMEM255AQ5JRV8 349 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 C1orf100Q5SVJ3 147 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 PRR9Q5T870 116 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 FRMPD2BQ6IN97 320 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 RBM43Q6ZSC3 357 aaKnown RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 CENPUQ71F23 418 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 PRSS41Q7RTY9 318 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 ZNF571Q7Z3V5 609 aaPredicted RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 ATP6V0D2Q8N8Y2 350 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 OR10G9Q8NGN4 311 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 PNPT1Q8TCS8 783 aaKnown RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 ACER1Q8TDN7 264 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 OSTF1Q92882 214 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 NAT9Q9BTE0 207 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 OSBPL11Q9BXB4 747 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 RSPH9Q9H1X1 276 aaPredicted RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 RNF167Q9H6Y7 350 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 NUDT15Q9NV35 164 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 HOXC10Q9NYD6 342 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 ZNF226Q9NYT6 803 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 OPN4Q9UHM6 478 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 STAP1Q9ULZ2 295 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 TRAF3IP3Q9Y228 551 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 TRAPPC4Q9Y296 219 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 GSTK1Q9Y2Q3 226 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 ALG6Q9Y672 507 aa1.45□□□□□ -2.18
VPS35-207ENST00000568191 NCAPD2Q15021 1401 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms