RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CFAP73A6NFT4 308 aa15.02■□□□□ -0
CLN3-216ENST00000565316 SSX4O60224 188 aa15.02■□□□□ -0
CLN3-216ENST00000565316 DBIP07108 87 aaKnown RBP15.02■□□□□ -0
CLN3-216ENST00000565316 CDKN2CP42773 168 aa15.02■□□□□ -0
CLN3-216ENST00000565316 DSCR9P59020 149 aa15.02■□□□□ -0
CLN3-216ENST00000565316 GNA13Q14344 377 aa15.02■□□□□ -0
CLN3-216ENST00000565316 MAPK11Q15759 364 aa15.02■□□□□ -0
CLN3-216ENST00000565316 GSTA3Q16772 222 aa15.02■□□□□ -0
CLN3-216ENST00000565316 COX20Q5RI15 118 aa15.02■□□□□ -0
CLN3-216ENST00000565316 MRPL2Q5T653 305 aaKnown RBP15.02■□□□□ -0
CLN3-216ENST00000565316 ZNF544Q6NX49 715 aa15.02■□□□□ -0
CLN3-216ENST00000565316 CASP12Q6UXS9 341 aa15.02■□□□□ -0
CLN3-216ENST00000565316 HIPK1Q86Z02 1210 aa15.02■□□□□ -0
CLN3-216ENST00000565316 MUC15Q8N387 334 aa15.02■□□□□ -0
CLN3-216ENST00000565316 C17orf78Q8N4C9 275 aa15.02■□□□□ -0
CLN3-216ENST00000565316 WDR60Q8WVS4 1066 aa15.02■□□□□ -0
CLN3-216ENST00000565316 TMEM45BQ96B21 275 aa15.02■□□□□ -0
CLN3-216ENST00000565316 OR52E6Q96RD3 313 aa15.02■□□□□ -0
CLN3-216ENST00000565316 RHNO1Q9BSD3 238 aa15.02■□□□□ -0
CLN3-216ENST00000565316 SLC17A5Q9NRA2 495 aa15.02■□□□□ -0
CLN3-216ENST00000565316 SLC7A10Q9NS82 523 aa15.02■□□□□ -0
CLN3-216ENST00000565316 RTTNQ86VV8 2226 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 IGHV4-30-2A0A087WSY4 118 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 IL7RP16871 459 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 TSPO2Q5TGU0 170 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 ZNF621Q6ZSS3 439 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 ZNF440Q8IYI8 595 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 FBXL14Q8N1E6 418 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 ZIC4Q8N9L1 334 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 BOD1Q96IK1 185 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 PIF1Q9H611 641 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 AMDHD2Q9Y303 409 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 CUBNO60494 3623 aa15.01□□□□□ -0.01
CLN3-216ENST00000565316 CDHR4A6H8M9 788 aa15□□□□□ -0.01
CLN3-216ENST00000565316 LIPT2A6NK58 231 aa15□□□□□ -0.01
CLN3-216ENST00000565316 ELOA3DA6NLF2 546 aaPredicted RBP15□□□□□ -0.01
CLN3-216ENST00000565316 H7C417 338 aa15□□□□□ -0.01
CLN3-216ENST00000565316 M0R1B8 84 aa15□□□□□ -0.01
CLN3-216ENST00000565316 KRT75O95678 551 aa15□□□□□ -0.01
CLN3-216ENST00000565316 GSNP06396 782 aa15□□□□□ -0.01
CLN3-216ENST00000565316 NR2F1P10589 423 aa15□□□□□ -0.01
CLN3-216ENST00000565316 UQCRBP14927 111 aa15□□□□□ -0.01
CLN3-216ENST00000565316 ACAA2P42765 397 aaKnown RBP15□□□□□ -0.01
CLN3-216ENST00000565316 FABP6P51161 128 aa15□□□□□ -0.01
CLN3-216ENST00000565316 NUDT6P53370 316 aa15□□□□□ -0.01
CLN3-216ENST00000565316 MVDP53602 400 aa15□□□□□ -0.01
CLN3-216ENST00000565316 SLC25A3Q00325 362 aa15□□□□□ -0.01
CLN3-216ENST00000565316 TGFBR3Q03167 851 aa15□□□□□ -0.01
CLN3-216ENST00000565316 ELOA3BQ3SY89 546 aa15□□□□□ -0.01
CLN3-216ENST00000565316 LSRQ86X29 649 aaPredicted RBP15□□□□□ -0.01
CLN3-216ENST00000565316 DEPDC4Q8N2C3 294 aa15□□□□□ -0.01
CLN3-216ENST00000565316 GLB1L3Q8NCI6 653 aaPredicted RBP15□□□□□ -0.01
CLN3-216ENST00000565316 ELOA3Q8NG57 546 aa15□□□□□ -0.01
CLN3-216ENST00000565316 SF3B5Q9BWJ5 86 aaKnown RBP15□□□□□ -0.01
CLN3-216ENST00000565316 PARD6BQ9BYG5 372 aa15□□□□□ -0.01
CLN3-216ENST00000565316 KCNK9Q9NPC2 374 aa15□□□□□ -0.01
CLN3-216ENST00000565316 YAE1D1Q9NRH1 226 aa15□□□□□ -0.01
CLN3-216ENST00000565316 UPB1Q9UBR1 384 aa15□□□□□ -0.01
CLN3-216ENST00000565316 NOL12Q9UGY1 213 aaKnown RBP eCLIP15□□□□□ -0.01
CLN3-216ENST00000565316 POU2F3Q9UKI9 436 aa15□□□□□ -0.01
CLN3-216ENST00000565316 V9GYY5 206 aaPredicted RBP15□□□□□ -0.01
CLN3-216ENST00000565316 DSPPQ9NZW4 1301 aa15□□□□□ -0.01
CLN3-216ENST00000565316 AQP7P3A6NL99 342 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 HDAC3O15379 428 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 SNNO75324 88 aaPredicted RBP14.99□□□□□ -0.01
CLN3-216ENST00000565316 EPHA3P29320 983 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 MPGP29372 298 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 LOXL1Q08397 574 aaPredicted RBP14.99□□□□□ -0.01
CLN3-216ENST00000565316 RAB35Q15286 201 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 CEP85LQ5SZL2 805 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 OTUD3Q5T2D3 398 aaPredicted RBP14.99□□□□□ -0.01
CLN3-216ENST00000565316 CLEC2AQ6UVW9 174 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 PEX5LQ8IYB4 626 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 TMEM99Q8N816 258 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 OR9K2Q8NGE7 335 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 PNPT1Q8TCS8 783 aaKnown RBP14.99□□□□□ -0.01
CLN3-216ENST00000565316 ZBTB18Q99592 522 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 C1QTNF6Q9BXI9 259 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 WDR55Q9H6Y2 383 aaPredicted RBP14.99□□□□□ -0.01
CLN3-216ENST00000565316 FKRPQ9H9S5 495 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 SLC6A13Q9NSD5 602 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 RLIMQ9NVW2 624 aa14.99□□□□□ -0.01
CLN3-216ENST00000565316 FAM234BA2RU67 622 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 TRPC5OSA6NMA1 111 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 GPRIN2O60269 458 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 IL6P05231 212 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 GPIP06744 558 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 CXCR1P25024 350 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 P2RY4P51582 365 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 WDR4P57081 412 aaKnown RBP14.98□□□□□ -0.01
CLN3-216ENST00000565316 CEACAM7Q14002 265 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 C9orf135Q5VTT2 229 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 POMGNT2Q8NAT1 580 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 TNFRSF13CQ96RJ3 184 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 CENPHQ9H3R5 247 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 THAP1Q9NVV9 213 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 RAB21Q9UL25 225 aa14.98□□□□□ -0.01
CLN3-216ENST00000565316 A8MV72 311 aaPredicted RBP14.97□□□□□ -0.01
CLN3-216ENST00000565316 RFXANKO14593 260 aa14.97□□□□□ -0.01
CLN3-216ENST00000565316 AKR7A3O95154 331 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms