RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 DNAJA4Q8WW22 397 aaPredicted RBP11.91□□□□□ -0.5
CLK3-216ENST00000564468 RASSF5Q8WWW0 418 aa11.91□□□□□ -0.5
CLK3-216ENST00000564468 C3orf49Q96BT1 292 aa11.91□□□□□ -0.5
CLK3-216ENST00000564468 WFIKKN1Q96NZ8 548 aa11.91□□□□□ -0.5
CLK3-216ENST00000564468 NANOGQ9H9S0 305 aa11.91□□□□□ -0.5
CLK3-216ENST00000564468 TESQ9UGI8 421 aaKnown RBP11.91□□□□□ -0.5
CLK3-216ENST00000564468 AP3M1Q9Y2T2 418 aa11.91□□□□□ -0.5
CLK3-216ENST00000564468 ELOA3DA6NLF2 546 aaPredicted RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 MFN2O95140 757 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 CNOT4O95628 575 aaKnown RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 C8BP07358 591 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 PNMTP11086 282 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 PSMB1P20618 241 aaKnown RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 FPR1P21462 350 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 AQP1P29972 269 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 PCGF2P35227 344 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 OR3A2P47893 321 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 SLC16A1P53985 500 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 PCBP3P57721 371 aaKnown RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 H3F3AP84243 136 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 SELPLGQ14242 412 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 P2RY6Q15077 328 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 ELOA3BQ3SY89 546 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 PRR14LQ5THK1 2151 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 FAM91A1Q658Y4 838 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 ERICH5Q6P6B1 374 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 PAQR6Q6TCH4 344 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 STAC2Q6ZMT1 411 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 ATG4DQ86TL0 474 aaPredicted RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 RANBP3LQ86VV4 465 aaPredicted RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 ZNF100Q8IYN0 542 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 ELOA3Q8NG57 546 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 OR52E4Q8NGH9 312 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 TMEM27Q9HBJ8 222 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 PARPBPQ9NWS1 579 aa11.9□□□□□ -0.5
CLK3-216ENST00000564468 ING1Q9UK53 422 aaPredicted RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 NOSIPQ9Y314 301 aaKnown RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 HEATR1Q9H583 2144 aaKnown RBP11.9□□□□□ -0.5
CLK3-216ENST00000564468 ZC3H12DA2A288 527 aaKnown RBP11.89□□□□□ -0.51
CLK3-216ENST00000564468 M0QX08 132 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 FRS3O43559 492 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 OR2T1O43869 369 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 VAMP5O95183 116 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 AHSA1O95433 338 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 IMPDH2P12268 514 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 CRYGSP22914 178 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 IL32P24001 234 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 CEACAM7Q14002 265 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 VMACQ2NL98 169 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 C1orf140Q5VVS0 124 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 ULK3Q6PHR2 472 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 C6orf89Q6UWU4 347 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 Q6ZT83 130 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 SPATA21Q7Z572 469 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 ARPINQ7Z6K5 226 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 CDC20BQ86Y33 519 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 GABRG1Q8N1C3 465 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 NINJ1Q92982 152 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 DNAJA3Q96EY1 480 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 SLC47A1Q96FL8 570 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 POM121Q96HA1 1249 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 ZNF300Q96RE9 604 aaPredicted RBP11.89□□□□□ -0.51
CLK3-216ENST00000564468 ELAC2Q9BQ52 826 aaKnown RBP11.89□□□□□ -0.51
CLK3-216ENST00000564468 SF3B5Q9BWJ5 86 aaKnown RBP11.89□□□□□ -0.51
CLK3-216ENST00000564468 PIF1Q9H611 641 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 SLC9A8Q9Y2E8 581 aa11.89□□□□□ -0.51
CLK3-216ENST00000564468 MAP1AP78559 2803 aaPredicted RBP11.89□□□□□ -0.51
CLK3-216ENST00000564468 DSCAMO60469 2012 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 LIPT2A6NK58 231 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 ZNF716A6NP11 495 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 TMEM229AB2RXF0 380 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 TPST1O60507 370 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 FMO6PO60774 539 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 MRPL33O75394 65 aaKnown RBP11.88□□□□□ -0.51
CLK3-216ENST00000564468 LGI1O95970 557 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 IFNA14P01570 189 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 HRGP04196 525 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 GTF2E2P29084 291 aaKnown RBP11.88□□□□□ -0.51
CLK3-216ENST00000564468 CCKARP32238 428 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 HOXC5Q00444 222 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 DMTNQ08495 405 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 BNIP2Q12982 314 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 ITGADQ13349 1161 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 VEZF1Q14119 521 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 OR7A5Q15622 319 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 GLIPR1L2Q4G1C9 344 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 RABL3Q5HYI8 236 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 ALG10BQ5I7T1 473 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 OTUD3Q5T2D3 398 aaPredicted RBP11.88□□□□□ -0.51
CLK3-216ENST00000564468 SFRP5Q5T4F7 317 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 ANKRD34AQ69YU3 496 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 TMEM225Q6GV28 225 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 CCDC80Q76M96 950 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 SSX8Q7RTT4 187 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 CPLX4Q7Z7G2 160 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 CXorf67Q86X51 503 aaPredicted RBP11.88□□□□□ -0.51
CLK3-216ENST00000564468 CCDC103Q8IW40 242 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 MFSD8Q8NHS3 518 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 KISS1RQ969F8 398 aaPredicted RBP11.88□□□□□ -0.51
CLK3-216ENST00000564468 SLC38A4Q969I6 547 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms