RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 EPS8Q12929 822 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 PDK3Q15120 406 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 C6orf52Q5T4I8 152 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 B3GLCTQ6Y288 498 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 VPS33AQ96AX1 596 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 OR52B2Q96RD2 323 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 RHNO1Q9BSD3 238 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 C1QTNF6Q9BXI9 259 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 BARX1Q9HBU1 254 aaPredicted RBP16.69■□□□□ 0.26
VPS35-202ENST00000561713 THAP1Q9NVV9 213 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 B3GALT5Q9Y2C3 310 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 ARFGEF3Q5TH69 2177 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 A0A096LNT2 108 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 CFAP73A6NFT4 308 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 TRPC5OSA6NMA1 111 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 MRPL33O75394 65 aaKnown RBP16.68■□□□□ 0.26
VPS35-202ENST00000561713 PGM3O95394 542 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 F12P00748 615 aaPredicted RBP16.68■□□□□ 0.26
VPS35-202ENST00000561713 MAGEA8P43361 318 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 ANXA11P50995 505 aaKnown RBP16.68■□□□□ 0.26
VPS35-202ENST00000561713 MAGOHP61326 146 aaKnown RBP16.68■□□□□ 0.26
VPS35-202ENST00000561713 SLC25A3Q00325 362 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 BNIP2Q12982 314 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 PDCD4Q53EL6 469 aaKnown RBP16.68■□□□□ 0.26
VPS35-202ENST00000561713 DTX2Q86UW9 622 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 CMIPQ8IY22 773 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 CADM2Q8N3J6 435 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 HTRA1Q92743 480 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 DDIT4LQ96D03 193 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 ASB6Q9NWX5 421 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 TAS2R16Q9NYV7 291 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 P2RX2Q9UBL9 471 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 MALT1Q9UDY8 824 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 FLVCR1Q9Y5Y0 555 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 SLC25A15Q9Y619 301 aa16.68■□□□□ 0.26
VPS35-202ENST00000561713 FAM234BA2RU67 622 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 M0R1B8 84 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 GPR171O14626 319 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 DNPH1O43598 174 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 DBIP07108 87 aaKnown RBP16.67■□□□□ 0.26
VPS35-202ENST00000561713 PRG2P13727 222 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 CRATP43155 626 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 OR7A5Q15622 319 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 AP1ARQ63HQ0 302 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 PEX5LQ8IYB4 626 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 USB1Q9BQ65 265 aaKnown RBP16.67■□□□□ 0.26
VPS35-202ENST00000561713 GRIP2Q9C0E4 1043 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 SLC7A10Q9NS82 523 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 CDC42EP3Q9UKI2 254 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 POU2F3Q9UKI9 436 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 ZNF443Q9Y2A4 671 aaPredicted RBP16.67■□□□□ 0.26
VPS35-202ENST00000561713 DSPPQ9NZW4 1301 aa16.67■□□□□ 0.26
VPS35-202ENST00000561713 YLPM1P49750 1951 aaKnown RBP16.66■□□□□ 0.26
VPS35-202ENST00000561713 E7EQL1 145 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 FRS3O43559 492 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 SLC22A3O75751 556 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 AKR7A3O95154 331 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 ANP32DO95626 131 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 KRT75O95678 551 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 C8BP07358 591 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 IDO1P14902 403 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 SLC1A3P43003 542 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 HTR3AP46098 478 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 DSTNP60981 165 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 SLC35A1P78382 337 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 IRX1P78414 480 aaPredicted RBP16.66■□□□□ 0.26
VPS35-202ENST00000561713 H3F3AP84243 136 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 GNA13Q14344 377 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 GABRA6Q16445 453 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 TMEM249Q2WGJ8 235 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 LIN52Q52LA3 116 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 C6orf10Q5SRN2 563 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 OTUD3Q5T2D3 398 aaPredicted RBP16.66■□□□□ 0.26
VPS35-202ENST00000561713 TSPO2Q5TGU0 170 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 SLC22A25Q6T423 547 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 TMEM99Q8N816 258 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 GLB1L3Q8NCI6 653 aaPredicted RBP16.66■□□□□ 0.26
VPS35-202ENST00000561713 OR10H5Q8NGA6 315 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 OR52P1PQ8NH57 321 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 TMEM19Q96HH6 336 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 MAELQ96JY0 434 aaKnown RBP16.66■□□□□ 0.26
VPS35-202ENST00000561713 FAIMQ9NVQ4 179 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 NKIRAS1Q9NYS0 192 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 SLC9A8Q9Y2E8 581 aa16.66■□□□□ 0.26
VPS35-202ENST00000561713 CDHR4A6H8M9 788 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 ZNF208O43345 1280 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 NUDT7P0C024 238 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 UQCRBP14927 111 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 CLK1P49759 484 aaKnown RBP16.65■□□□□ 0.26
VPS35-202ENST00000561713 NUDT6P53370 316 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 LGALS3BPQ08380 585 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 CEACAM7Q14002 265 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 NRF1Q16656 503 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 KRTAP24-1Q3LI83 254 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 ATG16L1Q676U5 607 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 CROCCP2Q86T23 111 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 CLIP4Q8N3C7 705 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 SLC38A5Q8WUX1 472 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 ZNF385AQ96PM9 386 aaKnown RBP16.65■□□□□ 0.26
VPS35-202ENST00000561713 TNFRSF13CQ96RJ3 184 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms