RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 AGAP5A6NIR3 686 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 ATP6V1G2-DDX39BF2Z307 99 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 HMGN4O00479 90 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 SKAP2O75563 359 aaPredicted RBP14.33□□□□□ -0.12
CLN3-208ENST00000561505 PDE5AO76074 875 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 LY6HO94772 140 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 RYKP34925 604 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 SLC1A3P43003 542 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 IDH2P48735 452 aaKnown RBP14.33□□□□□ -0.12
CLN3-208ENST00000561505 PDLIM4P50479 330 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 POLR2HP52434 150 aaKnown RBP14.33□□□□□ -0.12
CLN3-208ENST00000561505 OR2B6P58173 313 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 FAM120AOSQ5T036 256 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 FAM166AQ6J272 317 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 CASP12Q6UXS9 341 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 FAM169BQ8N8A8 192 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 POMGNT2Q8NAT1 580 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 DDIT4LQ96D03 193 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 SORCS2Q96PQ0 1159 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 TRNT1Q96Q11 434 aaKnown RBP14.33□□□□□ -0.12
CLN3-208ENST00000561505 NAA11Q9BSU3 229 aaPredicted RBP14.33□□□□□ -0.12
CLN3-208ENST00000561505 UPB1Q9UBR1 384 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 TMED7Q9Y3B3 224 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 LOC390937A0A1W2PQ73 354 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 ZC3H12DA2A288 527 aaKnown RBP14.32□□□□□ -0.12
CLN3-208ENST00000561505 AP3D1O14617 1153 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 TYROBPO43914 113 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 WNT11O96014 354 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 SRD5A1P18405 259 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 P2RY4P51582 365 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 TXNL4AP83876 142 aaKnown RBP14.32□□□□□ -0.12
CLN3-208ENST00000561505 EFNB3Q15768 340 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 GSTA3Q16772 222 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 ZSWIM7Q19AV6 140 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 ANXA8L1Q5VT79 327 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 TNFAIP8L2Q6P589 184 aaPredicted RBP14.32□□□□□ -0.12
CLN3-208ENST00000561505 OR4A15Q8NGL6 344 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 MAGEE2Q8TD90 523 aaPredicted RBP14.32□□□□□ -0.12
CLN3-208ENST00000561505 ZNF317Q96PQ6 595 aaPredicted RBP14.32□□□□□ -0.12
CLN3-208ENST00000561505 AKTIPQ9H8T0 292 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 HAO1Q9UJM8 370 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 KCNS2Q9ULS6 477 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 MOKQ9UQ07 419 aa14.32□□□□□ -0.12
CLN3-208ENST00000561505 ARPC4-TTLL3A0A0A6YYG9 625 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 IGHV1-18A0A0C4DH31 117 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 IGHV4-61A0A0C4DH41 118 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 LIPT2A6NK58 231 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 AQP7P3A6NL99 342 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 C1QCP02747 245 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 C8BP07358 591 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 GIFP27352 417 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 TACR3P29371 465 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 KHKP50053 298 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 EPS8Q12929 822 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 DPY19L1Q2PZI1 675 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 LRRC74BQ6ZQY2 392 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 VPS37AQ8NEZ2 397 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 CCDC115Q96NT0 180 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 FOXN4Q96NZ1 517 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 ZNF385AQ96PM9 386 aaKnown RBP14.31□□□□□ -0.12
CLN3-208ENST00000561505 KATNB1Q9BVA0 655 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 MTHFD2LQ9H903 347 aaPredicted RBP14.31□□□□□ -0.12
CLN3-208ENST00000561505 BTNL2Q9UIR0 455 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.31□□□□□ -0.12
CLN3-208ENST00000561505 FKBP7Q9Y680 259 aa14.31□□□□□ -0.12
CLN3-208ENST00000561505 LOC100289279A0A1B0GTE1 492 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 B9A039 149 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 FZD7O75084 574 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 NPIPB7O75200 414 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 IGLV1-44P01699 117 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 HOXB1P14653 301 aaPredicted RBP14.3□□□□□ -0.12
CLN3-208ENST00000561505 CREB1P16220 341 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 ZNF23P17027 643 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 SERPINF1P36955 418 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 MAPK11Q15759 364 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 C9orf135Q5VTT2 229 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 TMEM99Q8N816 258 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 OR9K2Q8NGE7 335 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 BCL2L2Q92843 193 aaPredicted RBP14.3□□□□□ -0.12
CLN3-208ENST00000561505 FBXO17Q96EF6 278 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 DNAJA3Q96EY1 480 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 C1orf159Q96HA4 380 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 PIMREGQ9BSJ6 248 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 ROPN1BQ9BZX4 212 aaPredicted RBP14.3□□□□□ -0.12
CLN3-208ENST00000561505 DPY30Q9C005 99 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 PLK3Q9H4B4 646 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 ROPN1Q9HAT0 212 aaPredicted RBP14.3□□□□□ -0.12
CLN3-208ENST00000561505 CA10Q9NS85 328 aa14.3□□□□□ -0.12
CLN3-208ENST00000561505 MARCOQ9UEW3 520 aaPredicted RBP14.3□□□□□ -0.12
CLN3-208ENST00000561505 FBXO9Q9UK97 447 aaPredicted RBP14.3□□□□□ -0.12
CLN3-208ENST00000561505 TLDC2A0PJX2 215 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 ITM2AO43736 263 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 SPAG7O75391 227 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 VAMP5O95183 116 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 PGRP06401 933 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 GPIP06744 558 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 CHRM4P08173 479 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 TACSTD2P09758 323 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 ACAA2P42765 397 aaKnown RBP14.29□□□□□ -0.12
CLN3-208ENST00000561505 PPOXP50336 477 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms