RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 WWP2O00308 870 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 DNALI1O14645 258 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 PHOX2AO14813 284 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 DFNA5O60443 496 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 KLHL41O60662 606 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CIB2O75838 187 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CLDN9O95484 217 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 LGI1O95970 557 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CST1P01037 141 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 IGHV3-23P01764 117 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 MMP1P03956 469 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 P04436 131 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 H2AFZP0C0S5 128 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 RBMY1DP0C7P1 496 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 RBMY1A1P0DJD3 496 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 SLC2A3P11169 496 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 COX5AP20674 150 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CXCR2P25025 360 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CD1CP29017 333 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 YWHABP31946 246 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 SHMT2P34897 504 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 UGT1A3P35503 534 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 KLK7P49862 253 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 MEOX2P50222 304 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CRYBB1P53674 252 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 PKNOX1P55347 436 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 PLP1P60201 277 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 IRX3P78415 501 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 OGDHQ02218 1023 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 EGFEM1PQ0D2K5 195 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 SRSF5Q13243 272 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 OXA1LQ15070 435 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 PRR4Q16378 134 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 DPYSL2Q16555 572 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 IMMTQ16891 758 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 KLHL38Q2WGJ6 581 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 C6orf226Q5I0X4 101 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 RNASEKQ6P5S7 137 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 UNQ9370/PRO34162Q6UXP9 181 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ACOT7LQ6ZUV0 252 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 NIPA1Q7RTP0 329 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 H2BFWTQ7Z2G1 175 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 FAM220AQ7Z4H9 259 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 HSD17B13Q7Z5P4 300 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 ZNF589Q86UQ0 364 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 SLC26A11Q86WA9 606 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CDC20BQ86Y33 519 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 EGFL6Q8IUX8 553 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 PSTKQ8IV42 348 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 CCDC50Q8IVM0 306 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 NRMQ8IXM6 262 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 TTC5Q8N0Z6 440 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 C6orf223Q8N319 242 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 SVOPLQ8N434 492 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 NECAB1Q8N987 351 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ACOT4Q8N9L9 421 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 FAM83FQ8NEG4 500 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 OR2L3Q8NG85 312 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 OR52I1Q8NGK6 324 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 KCNG3Q8TAE7 436 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 RAB3IL1Q8TBN0 382 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 MRAPQ8TCY5 172 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 TCTEX1D2Q8WW35 142 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 UFD1Q92890 307 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 EFHD2Q96C19 240 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 CXorf40BQ96DE9 158 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 TM4SF19Q96DZ7 209 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 TPD52L3Q96J77 140 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 PLEKHA8Q96JA3 519 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ZNF641Q96N77 438 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 PANX1Q96RD7 426 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 KCNA7Q96RP8 456 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ZNF184Q99676 751 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 KIR2DL4Q99706 377 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 NAT9Q9BTE0 207 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 C19orf24Q9BVV8 132 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ACTR6Q9GZN1 396 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ANKRD19PQ9H560 264 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ZNF385DQ9H6B1 395 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 REEP4Q9H6H4 257 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 NARFLQ9H6Q4 476 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 PTGES2Q9H7Z7 377 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 VPS37BQ9H9H4 285 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 NHEJ1Q9H9Q4 299 aaPredicted RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 PLSCR3Q9NRY6 295 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 KLHL28Q9NXS3 571 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 BFARQ9NZS9 450 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 SENP1Q9P0U3 644 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 APOBEC3BQ9UH17 382 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 CTNNA3Q9UI47 895 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CLEC4EQ9ULY5 219 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CA5BQ9Y2D0 317 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 UGT2A1Q9Y4X1 527 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CSDC2Q9Y534 153 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 NPTNQ9Y639 398 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 AGRNO00468 2067 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 PLEKHH1Q9ULM0 1364 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 GTF3C1Q12789 2109 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 PPIAL4EA0A075B759 164 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 IGHV1OR21-1A0A087WYE8 117 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms