RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 HTR3CQ8WXA8 447 aa2.05□□□□□ -2.08
VPS13C-207ENST00000558919 TIMD4Q96H15 378 aa2.05□□□□□ -2.08
VPS13C-207ENST00000558919 CEP170P1Q96L14 293 aa2.05□□□□□ -2.08
VPS13C-207ENST00000558919 NIPSNAP3BQ9BS92 247 aa2.05□□□□□ -2.08
VPS13C-207ENST00000558919 HDHD3Q9BSH5 251 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-207ENST00000558919 ROGDIQ9GZN7 287 aa2.05□□□□□ -2.08
VPS13C-207ENST00000558919 POLR1EQ9GZS1 481 aaKnown RBP2.05□□□□□ -2.08
VPS13C-207ENST00000558919 NXF5Q9H1B4 397 aaKnown RBP2.05□□□□□ -2.08
VPS13C-207ENST00000558919 SUDS3Q9H7L9 328 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-207ENST00000558919 DMAP1Q9NPF5 467 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-207ENST00000558919 AATFQ9NY61 560 aaKnown RBP eCLIP2.05□□□□□ -2.08
VPS13C-207ENST00000558919 RASD1Q9Y272 281 aa2.05□□□□□ -2.08
VPS13C-207ENST00000558919 DCTN6O00399 190 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 AGPAT2O15120 278 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 TPST2O60704 377 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 TRIM16O95361 564 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 POU2F1P14859 743 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 POLR2EP19388 210 aaKnown RBP2.04□□□□□ -2.08
VPS13C-207ENST00000558919 NT5EP21589 574 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 CXCR2P25025 360 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SHMT2P34897 504 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 CD86P42081 329 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 GLP1RP43220 463 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 NMUP48645 174 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SLAQ13239 276 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SCGB2A2Q13296 93 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SNTB2Q13425 540 aaKnown RBP2.04□□□□□ -2.08
VPS13C-207ENST00000558919 PSG5Q15238 335 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 INAQ16352 499 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 BOLA3Q53S33 107 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 TMEM41BQ5BJD5 291 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 GPRC6AQ5T6X5 926 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 TIGD3Q6B0B8 471 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 ZNF621Q6ZSS3 439 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 KIAA1328Q86T90 577 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 ACOT1Q86TX2 421 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SLC22A8Q8TCC7 542 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 DEDD2Q8WXF8 326 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 STARD8Q92502 1023 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 PHF3Q92576 2039 aaKnown RBP2.04□□□□□ -2.08
VPS13C-207ENST00000558919 ARPC1AQ92747 370 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SEC22AQ96IW7 307 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 FCRL1Q96LA6 429 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 TSNARE1Q96NA8 513 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 TAS2R3Q9NYW6 316 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SLC25A37Q9NYZ2 338 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 SIGLEC8Q9NYZ4 499 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 ACTR3BQ9P1U1 418 aa2.04□□□□□ -2.08
VPS13C-207ENST00000558919 KDRP35968 1356 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 A0A087WZY1 265 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 A0A1B0GUS0 222 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 TMEM150BA6NC51 233 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 SERPINE3A8MV23 424 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 TRDCB7Z8K6 153 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 C11orf94C9JXX5 98 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 CLDN3O15551 220 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 OR1F1O43749 312 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 SPAG7O75391 227 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 B3GALNT1O75752 331 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 COX5AP20674 150 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 CALCRP30988 508 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 VDAC2P45880 294 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-207ENST00000558919 NUCB2P80303 420 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 ATP6AP1Q15904 470 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 CCDC57Q2TAC2 916 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 DEFB116Q30KQ4 102 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 FRMPD2BQ6IN97 320 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 ZNF571Q7Z3V5 609 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-207ENST00000558919 CENPLQ8N0S6 344 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-207ENST00000558919 TMEM61Q8N0U2 210 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 ATP6V0D2Q8N8Y2 350 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 OR4D9Q8NGE8 314 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 OR9G1Q8NH87 305 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 SPRYD4Q8WW59 207 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-207ENST00000558919 PAGE5Q96GU1 130 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 ALG12Q9BV10 488 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 IFI27L2Q9H2X8 130 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 CCL28Q9NRJ3 127 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 HPF1Q9NWY4 346 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 GNPTGQ9UJJ9 305 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 TRAF3IP3Q9Y228 551 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 TRAPPC4Q9Y296 219 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 MFHAS1Q9Y4C4 1052 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 U3KQV3 271 aa2.03□□□□□ -2.08
VPS13C-207ENST00000558919 ZSCAN12O43309 604 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 SS18L1O75177 396 aaPredicted RBP2.02□□□□□ -2.09
VPS13C-207ENST00000558919 MFN2O95140 757 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 LRATO95237 230 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 STAMBPO95630 424 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 RETP07949 1114 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 CALCBP10092 127 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 TBPP20226 339 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 ARRB1P49407 418 aaPredicted RBP2.02□□□□□ -2.09
VPS13C-207ENST00000558919 RPS14P62263 151 aaKnown RBP2.02□□□□□ -2.09
VPS13C-207ENST00000558919 HTD2P86397 168 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 MOBPQ13875 183 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 PARP15Q460N3 678 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 ISLR2Q6UXK2 745 aa2.02□□□□□ -2.09
VPS13C-207ENST00000558919 ABHD12BQ7Z5M8 362 aaPredicted RBP2.02□□□□□ -2.09
VPS13C-207ENST00000558919 MOB3BQ86TA1 216 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms