RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 MRM1Q6IN84 353 aaKnown RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 RNF44Q7L0R7 432 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 PRSS42Q7Z5A4 293 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 TMEM52Q8NDY8 209 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 STK35Q8TDR2 534 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 TTC9Q92623 222 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 SMARCD2Q92925 531 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 WNT2BQ93097 391 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 RASD2Q96D21 266 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 NOX3Q9HBY0 568 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 C2orf42Q9NWW7 574 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 IER3IP1Q9Y5U9 82 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 HEATR5AQ86XA9 2040 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 PIN1P1O15428 100 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 P2RX6O15547 441 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 ADH1AP07327 375 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 PGDP52209 483 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 PLAURQ03405 335 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 ARSKQ6UWY0 536 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 LINC00471Q8N535 108 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 COX18Q8N8Q8 333 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 OR2L5Q8NG80 312 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 OR2L3Q8NG85 312 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 ZNF681Q96N22 645 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 UBL7Q96S82 380 aaPredicted RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 GFI1Q99684 422 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 ZMAT3Q9HA38 289 aaKnown RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 GTF2A1LQ9UNN4 478 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 SIGLEC7Q9Y286 467 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 TSPAN11A1L157 253 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 MCIDASD6RGH6 385 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 H0Y8X5 98 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 PLPP2O43688 288 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 CLEC3AO75596 197 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 HOXD4P09016 255 aaPredicted RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 CISD3P0C7P0 127 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 NDUFS1P28331 727 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 BMP8BP34820 402 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 GABRA3P34903 492 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 NANOS3P60323 173 aaKnown RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 FAM53BQ14153 422 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 HNRNPA1L2Q32P51 320 aaKnown RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 DCAF12L2Q5VW00 463 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 POMZP3Q6PJE2 187 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 BTN2A1Q7KYR7 527 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 BMP8AQ7Z5Y6 402 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 FAM219AQ8IW50 185 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 NRSN1Q8IZ57 195 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 OR10AC1Q8NH08 325 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 ZDHHC1Q8WTX9 485 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 KLHL15Q96M94 604 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 LMAN2LQ9H0V9 348 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 CACYBPQ9HB71 228 aaKnown RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 TMEM138Q9NPI0 162 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 SCP2D1Q9UJQ7 156 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 GPR34Q9UPC5 381 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 MOKQ9UQ07 419 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 MRPS23Q9Y3D9 190 aaKnown RBP11.36□□□□□ -0.59
LDLR-205ENST00000557933 KCNMB2Q9Y691 235 aa11.36□□□□□ -0.59
LDLR-205ENST00000557933 C17orf113A0A1B0GUU1 675 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 ANXA2P2A6NMY6 339 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 EGFP01133 1207 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 CSN2P05814 226 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 VASPP50552 380 aaPredicted RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 SEC13P55735 322 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 HSD17B12Q53GQ0 312 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 C3P1Q6ZMU1 363 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 GID4Q8IVV7 300 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 SYNPRQ8TBG9 265 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 SLC25A38Q96DW6 304 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 NARS2Q96I59 477 aaKnown RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 EPHX3Q9H6B9 360 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 ANKRD10Q9NXR5 420 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 FKBP7Q9Y680 259 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 LINC01553A4QN01 128 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 TRAPPC13A5PLN9 417 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 TVP23AA6NH52 213 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 PYCARD-AS1I3L0S3 204 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 FGF19O95750 216 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 CTSBP07858 339 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 CT62P0C5K7 136 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 OR8G3PP0DMU2 310 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 PSMB1P20618 241 aaKnown RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 NUP62P37198 522 aaPredicted RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 EMDP50402 254 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 STX4Q12846 297 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 SQSTM1Q13501 440 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 CLLU1Q5K131 121 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 B3GNTL1Q67FW5 361 aaPredicted RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 C11orf88Q6PI97 169 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 OR56B4Q8NH76 319 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 PATE1Q8WXA2 126 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 AHCYL2Q96HN2 611 aaKnown RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 ZNF514Q96K75 400 aaPredicted RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 HSPA12BQ96MM6 686 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 CMC2Q9NRP2 79 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 NFKBIL1Q9UBC1 381 aaPredicted RBP11.35□□□□□ -0.59
LDLR-205ENST00000557933 ST6GALNAC2Q9UJ37 374 aa11.35□□□□□ -0.59
LDLR-205ENST00000557933 HRKO00198 91 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 ZNF35P13682 527 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms