RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 CLEC4MQ9H2X3 399 aaPredicted RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 CXorf21Q9HAI6 301 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 PRDM7Q9NQW5 492 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 MED17Q9NVC6 651 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 DNAJB11Q9UBS4 358 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 NDRG4Q9ULP0 352 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 HSPB11Q9Y547 144 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 LYVE1Q9Y5Y7 322 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 A0A0G2JMP0 313 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 A0A1W2PQ09 198 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF716A6NP11 495 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 ABCD4O14678 606 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 SEMA7AO75326 666 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 RHBDL1O75783 438 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 CYP7B1O75881 506 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 SEC14L2O76054 403 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 TXNDC12O95881 172 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 RPN2P04844 631 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF735P0CB33 412 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 JUNBP17275 347 aaPredicted RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 ANXA7P20073 488 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 IL11P20809 199 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 CD72P21854 359 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 PAX6P26367 422 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 ERP29P30040 261 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 LTBRP36941 435 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 MC3RP41968 323 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 TNFRSF4P43489 277 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 RPS5P46782 204 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 OR1E2P47887 323 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 SERPINB10P48595 397 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 RAB28P51157 221 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 CCR8P51685 355 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 STARD6P59095 220 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 NUTF2P61970 127 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 SNRPNP63162 240 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 PRDX1Q06830 199 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 RBM48Q5RL73 367 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 VASNQ6EMK4 673 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 SPNS3Q6ZMD2 512 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 GCNT2Q8N0V5 402 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 OR52E1Q8NGJ3 308 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 NFKBIDQ8NI38 313 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 C2CD4CQ8TF44 421 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 WFDC12Q8WWY7 111 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 C14orf144Q96I85 54 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 TREX2Q9BQ50 279 aaPredicted RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 AIF1LQ9BQI0 150 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 POLDIP3Q9BY77 421 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 RBCK1Q9BYM8 510 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 SLC6A20Q9NP91 592 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 IMP3Q9NV31 184 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 MRPL22Q9NWU5 206 aaKnown RBP4.72□□□□□ -1.65
TMEM260-210ENST00000556422 SEC14L4Q9UDX3 406 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 ADAM30Q9UKF2 790 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 TCFL5Q9UL49 500 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 PPP1R3CQ9UQK1 317 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 GSTK1Q9Y2Q3 226 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 MAP4K5Q9Y4K4 846 aa4.72□□□□□ -1.65
TMEM260-210ENST00000556422 GON4LQ3T8J9 2241 aa4.71□□□□□ -1.65
TMEM260-210ENST00000556422 A0A0A6YYD5 115 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 H0Y8X5 98 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 J3KTA2 159 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 BCKDKO14874 412 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 TCF21O43680 179 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 XPNPEP2O43895 674 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 TBX19O60806 448 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 CH25HO95992 272 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 EGFP01133 1207 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 ARAFP10398 606 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 PVALBP20472 110 aaPredicted RBP4.71□□□□□ -1.66
TMEM260-210ENST00000556422 THBS4P35443 961 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 RPL3P39023 403 aaKnown RBP4.71□□□□□ -1.66
TMEM260-210ENST00000556422 CAPZBP47756 277 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 SMSP52788 366 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 SUCLG1P53597 346 aaKnown RBP4.71□□□□□ -1.66
TMEM260-210ENST00000556422 DEFA5Q01523 94 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 SLC13A2Q13183 592 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 CDK5R2Q13319 367 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 KEAP1Q14145 624 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 CRB2Q5IJ48 1285 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 AGAP6Q5VW22 663 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 PLET1Q6UQ28 207 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 B3GNT8Q7Z7M8 397 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 ZNF605Q86T29 641 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 BOD1L2Q8IYS8 172 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 ZNF555Q8NEP9 628 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 STXBP6Q8NFX7 210 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 OR4C15Q8NGM1 316 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 APH1BQ8WW43 257 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 UBE2FQ969M7 185 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 NXPE2Q96DL1 559 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 C5orf30Q96GV9 206 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 AGAP4Q96P64 663 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 CSF3RQ99062 836 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 EPYCQ99645 322 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 MACROD1Q9BQ69 325 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 C2orf88Q9BSF0 95 aa4.71□□□□□ -1.66
TMEM260-210ENST00000556422 ZNF2Q9BSG1 426 aaPredicted RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms