RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 RRM2BQ7LG56 351 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 P4HA3Q7Z4N8 544 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 FNDC9Q8TBE3 224 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 ZPLD1Q8TCW7 415 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 TMEM43Q9BTV4 400 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 POTEKPQ9BYX7 375 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 MCTS1Q9ULC4 181 aaKnown RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 MED31Q9Y3C7 131 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 AP4S1Q9Y587 144 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 U3KQV3 271 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 A0A1W2PRQ8 180 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 SLC22A20A6NK97 555 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 LRRN3E7EW58 273 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 NPIPB7O75200 414 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 ENTPD5O75356 428 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 HOXB6P17509 224 aaKnown RBP12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 RBM34P42696 430 aaKnown RBP12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 CA7P43166 264 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 LSM11P83369 360 aaKnown RBP eCLIP12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 DGCR6Q14129 220 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 OR2T5Q6IEZ7 315 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 PODNL1Q6PEZ8 512 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 B3GNT6Q6ZMB0 384 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 NCCRP1Q6ZVX7 275 aaPredicted RBP12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 FJX1Q86VR8 437 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 OR2T29Q8NH02 315 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 SLC7A13Q8TCU3 470 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 ROBO4Q8WZ75 1007 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 TAAR8Q969N4 342 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 CPNE4Q96A23 557 aaPredicted RBP12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 ZHX1-C8orf76Q96EF9 292 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 HS6ST2Q96MM7 605 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 REEP1Q9H902 201 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 PAQR5Q9NXK6 330 aaPredicted RBP12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 TMCC3Q9ULS5 477 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 SAMHD1Q9Y3Z3 626 aaKnown RBP12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 FAM215AQ9Y5M1 114 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 NCKAP5O14513 1909 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 CFAP46Q8IYW2 2715 aa12.59□□□□□ -0.39
VIPAS39-208ENST00000556412 TRBV4-1A0A0J9YWV2 114 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 LIPT2A6NK58 231 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 ENO4A6NNW6 628 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 TNFRSF11BO00300 401 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 CCL21O00585 134 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 PMS2P2O95744 297 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 CH25HO95992 272 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 STSP08842 583 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 KLK2P20151 261 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 ENPP1P22413 925 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 PTGER4P35408 488 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 RAC3P60763 192 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 EXOC3L2Q2M3D2 409 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 FAM69AQ5T7M9 428 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 RTL6Q6ICC9 239 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 C5orf46Q6UWT4 87 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 MEX3DQ86XN8 651 aaKnown RBP12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 NRMQ8IXM6 262 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 ACOT11Q8WXI4 607 aaPredicted RBP12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 ALPK1Q96QP1 1244 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF426Q9BUY5 554 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 PTDSS2Q9BVG9 487 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 KLHL4Q9C0H6 718 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 ANKRD19PQ9H560 264 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 MEPEQ9NQ76 525 aaPredicted RBP12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 A0A087WUU8 490 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 LRRTM2O43300 516 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 OR2T1O43869 369 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 E2F6O75461 281 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 AKR7A3O95154 331 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 TGM6O95932 706 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 IFI30P13284 250 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 SLC35A1P78382 337 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF239Q16600 458 aaKnown RBP12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 NSUN5P2Q63ZY6 315 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 PAPD5Q8NDF8 572 aaKnown RBP12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 STMN2Q93045 179 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 MOGAT1Q96PD6 335 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 UCN2Q96RP3 112 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 SLC19A3Q9BZV2 496 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 C20orf141Q9NUB4 165 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 TRAPPC4Q9Y296 219 aa12.58□□□□□ -0.4
VIPAS39-208ENST00000556412 FAM208BQ5VWN6 2430 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 PRRC2CQ9Y520 2896 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 KRT36O76013 467 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 AQP8O94778 261 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 HOXD4P09016 255 aaPredicted RBP12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 PER3P56645 1201 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 NUP107P57740 925 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 IL1RL1Q01638 556 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 PMPCAQ10713 525 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 LAPTM4AQ15012 233 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 SEC23BQ15437 767 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 MBOAT2Q6ZWT7 520 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 MCEMP1Q8IX19 187 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 GCNT2Q8N0V5 402 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 OR4K5Q8NGD3 323 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 MFSD8Q8NHS3 518 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 SGTBQ96EQ0 304 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 DHRS1Q96LJ7 313 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 TTYH2Q9BSA4 534 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms