RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TAF8Q7Z7C8 310 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 VASH2Q86V25 355 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 PSTKQ8IV42 348 aaKnown RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SLC22A9Q8IVM8 553 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 BBS7Q8IWZ6 715 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 THEM5Q8N1Q8 247 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 TMEM86AQ8N2M4 240 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CSGALNACT2Q8N6G5 542 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ALLCQ8N6M5 410 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 OR6T1Q8NGN1 323 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CLHC1Q8NHS4 586 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CDC26Q8NHZ8 85 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 KIF18AQ8NI77 898 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 RLN3Q8WXF3 142 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 MRPS31Q92665 395 aaKnown RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 PEX13Q92968 403 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 FAM162AQ96A26 154 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 PIWIL1Q96J94 861 aaKnown RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 RCHY1Q96PM5 261 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ACCSQ96QU6 501 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 KCNK16Q96T55 309 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CCDC77Q9BR77 488 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 NTMT1Q9BV86 223 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 FAM129AQ9BZQ8 928 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CARD9Q9H257 536 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 UBQLN3Q9H347 655 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 C5orf66Q9H5L9 145 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 TMEM206Q9H813 350 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 NMUR1Q9HB89 426 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 FAM114A2Q9NRY5 505 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 NUDT15Q9NV35 164 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ANGPTL2Q9UKU9 493 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SLC6A5Q9Y345 797 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 KLK4Q9Y5K2 254 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SLCO1B1Q9Y6L6 691 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 TACC2O95359 2948 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 C15orf38-AP3S2A0A0A6YYH1 394 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 C1orf232A0A0U1RR37 186 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 E9PBE3 544 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 GOLGA8MH3BSY2 632 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 FLRT2O43155 660 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 ACSL4O60488 711 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF253O75346 499 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 SPAG6O75602 509 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 AKAP3O75969 853 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 MOCS2O96007 188 aaPredicted RBP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CSF2P04141 144 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 FGF4P08620 206 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 TPBGLP0DKB5 382 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CCDC192P0DO97 292 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CCNA2P20248 432 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CCR1P32246 355 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 P2RY2P41231 377 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 SLC1A3P43003 542 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 RANBP1P43487 201 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 STARP49675 285 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 RPL10AP62906 217 aaKnown RBP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 RPA4Q13156 261 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 MSLNQ13421 630 aaPredicted RBP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 TNK1Q13470 666 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CASP8Q14790 479 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 KRT31Q15323 416 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 SLC22A6Q4U2R8 563 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 C6orf136Q5SQH8 315 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 RESP18Q5W5W9 173 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 SLC27A4Q6P1M0 643 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 METTL23Q86XA0 190 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 STX12Q86Y82 276 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 NELFCDQ8IXH7 590 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 SYCP3Q8IZU3 236 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 BBS5Q8N3I7 341 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 FBXW8Q8N3Y1 598 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 ARFGAP2Q8N6H7 521 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 C12orf29Q8N999 325 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 TSTD1Q8NFU3 115 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 GANCQ8TET4 914 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 PCNPQ8WW12 178 aaKnown RBP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CCDC127Q96BQ5 260 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 TMA16Q96EY4 203 aaKnown RBP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 NAA11Q9BSU3 229 aaPredicted RBP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 EDEM2Q9BV94 578 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 PDFQ9HBH1 243 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 BATF3Q9NR55 127 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 FARSBQ9NSD9 589 aaKnown RBP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 FAM49BQ9NUQ9 324 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.58□□□□□ -1.84
PRPF39-209ENST00000556353 NINJ2Q9NZG7 142 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 IL37Q9NZH6 218 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 DHRS4-AS1Q9P1J3 65 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CDH9Q9ULB4 789 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 RAB23Q9ULC3 237 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 MMP17Q9ULZ9 603 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 AKAP9Q99996 3911 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 UBE4BO95155 1302 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 CELSR2Q9HCU4 2923 aa3.58□□□□□ -1.84
PRPF39-209ENST00000556353 UNC79Q9P2D8 2635 aa3.57□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF233A6NK53 670 aa3.57□□□□□ -1.84
PRPF39-209ENST00000556353 A8MXE2 369 aa3.57□□□□□ -1.84
PRPF39-209ENST00000556353 PGLSO95336 258 aa3.57□□□□□ -1.84
PRPF39-209ENST00000556353 KLF8O95600 359 aaPredicted RBP3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms