RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 POTEKPQ9BYX7 375 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 EMC3Q9P0I2 261 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 SLC13A4Q9UKG4 626 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 APCP25054 2843 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 A0A1B0GWA3 101 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 M0QX08 132 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 NPIPB7O75200 414 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 GOSR1O95249 250 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 HRGP04196 525 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 DRD4P21917 467 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 OR3A2P47893 321 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 CRYBA2P53672 197 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 SLC16A1P53985 500 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 CEACAM7Q14002 265 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 OR7A5Q15622 319 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 C1orf140Q5VVS0 124 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 FBXW10Q5XX13 1052 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 PAQR6Q6TCH4 344 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 C22orf34Q6ZV56 151 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 GALNT5Q7Z7M9 940 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 PATL1Q86TB9 770 aaKnown RBP12.17□□□□□ -0.46
SHMT2-219ENST00000555563 CXorf67Q86X51 503 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-219ENST00000555563 CDC20BQ86Y33 519 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 TREML1Q86YW5 311 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 OR52E4Q8NGH9 312 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 RP9Q8TA86 221 aaKnown RBP12.17□□□□□ -0.46
SHMT2-219ENST00000555563 TAMM41Q96BW9 452 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 ZC3HAV1LQ96H79 300 aaKnown RBP12.17□□□□□ -0.46
SHMT2-219ENST00000555563 ECSITQ9BQ95 431 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 ACTR6Q9GZN1 396 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 NSRP1Q9H0G5 558 aaKnown RBP12.17□□□□□ -0.46
SHMT2-219ENST00000555563 GID8Q9NWU2 228 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 RPS6KB2Q9UBS0 482 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 PRSS50Q9UI38 385 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 USP22Q9UPT9 525 aa12.17□□□□□ -0.46
SHMT2-219ENST00000555563 MPDZO75970 2070 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 ELOA3DA6NLF2 546 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 DYNC1I1O14576 645 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 CASKO14936 926 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 SIAH2O43255 324 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 TPST2O60704 377 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 EIF1BO60739 113 aaKnown RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 AKR7A3O95154 331 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 AHSA1O95433 338 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 GPIP06744 558 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 COX4I1P13073 169 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 PSMB1P20618 241 aaKnown RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 CD247P20963 164 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 GNGT1P63211 74 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 EGR4Q05215 589 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 TSC22D1Q15714 1073 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 DUSP7Q16829 419 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 ELOA3BQ3SY89 546 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 ALG10BQ5I7T1 473 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 OTUD3Q5T2D3 398 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 INTS11Q5TA45 600 aaKnown RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 RANBP3LQ86VV4 465 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 ELOA3Q8NG57 546 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 STK35Q8TDR2 534 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 ARHGDIGQ99819 225 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 NAA11Q9BSU3 229 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 PTDSS2Q9BVG9 487 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 TRIM2Q9C040 744 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 EVA1AQ9H8M9 152 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 C12orf10Q9HB07 376 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 FANCFQ9NPI8 374 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 ADPRHL2Q9NX46 363 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 ZNF226Q9NYT6 803 aa12.16□□□□□ -0.46
SHMT2-219ENST00000555563 C6orf203Q9P0P8 240 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-219ENST00000555563 DCHS2Q6V1P9 2916 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 IGKV1D-42A0A075B6H8 117 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 A0A0B4J2E0 115 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 A0A1B0GX12 115 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 A0A1W2PPR1 153 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 GMNCA6NCL1 334 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 AQP7P3A6NL99 342 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 CCT8L1PA6NM43 557 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 DEFB108AA8MXU0 73 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 FAM220BPB1ANY3 271 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 GPR171O14626 319 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 AIM2O14862 343 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 SNX3O60493 162 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 LGI1O95970 557 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 ADAP00813 363 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 THBDP07204 575 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 C8BP07358 591 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 PNMTP11086 282 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 PPP3CBP16298 524 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 CRYGSP22914 178 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 NTF4P34130 210 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 SLC17A1Q14916 467 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 OR1Q1Q15612 314 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 NPTX1Q15818 432 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 NRF1Q16656 503 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 ERICH5Q6P6B1 374 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 Q6ZT83 130 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 CCDC80Q76M96 950 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 ZNF100Q8IYN0 542 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 TMEM99Q8N816 258 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 OR4D11Q8NGI4 311 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms