RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 SHISA9B4DS77 424 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 SNNO75324 88 aaPredicted RBP11.23□□□□□ -0.61
LINC00643-202ENST00000553426 BMP4P12644 408 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 NCF2P19878 526 aaPredicted RBP11.23□□□□□ -0.61
LINC00643-202ENST00000553426 RPS4Y1P22090 263 aaKnown RBP11.23□□□□□ -0.61
LINC00643-202ENST00000553426 IL12AP29459 219 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF83P51522 516 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 SLC18A1P54219 525 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 WDR4P57081 412 aaKnown RBP11.23□□□□□ -0.61
LINC00643-202ENST00000553426 EPS8Q12929 822 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 COX20Q5RI15 118 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 C1QTNF12Q5T7M4 302 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 KLHL24Q6TFL4 600 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 MSANTD1Q6ZTZ1 278 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 DTX2Q86UW9 622 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 FBXL14Q8N1E6 418 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 CADM2Q8N3J6 435 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 OR52P1PQ8NH57 321 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 ITCHQ96J02 903 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 MUS81Q96NY9 551 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 DHRS9Q9BPW9 319 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 TAPBPLQ9BX59 468 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 TPT1P8Q9HAU6 139 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 NPAP1Q9NZP6 1156 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 ZIM2Q9NZV7 527 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 DCTN4Q9UJW0 460 aa11.23□□□□□ -0.61
LINC00643-202ENST00000553426 CDHR4A6H8M9 788 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 M0R1B8 84 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 UBDO15205 165 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 ADAM11O75078 769 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 ERLIN1O75477 346 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 KRT33AO76009 404 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 WNT11O96014 354 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 CD40P25942 277 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 TTKP33981 857 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 ACVR1BP36896 505 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 DSTNP60981 165 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 DMTNQ08495 405 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 GABRA6Q16445 453 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 C6orf10Q5SRN2 563 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 OTUD3Q5T2D3 398 aaPredicted RBP11.22□□□□□ -0.61
LINC00643-202ENST00000553426 WBP2NLQ6ICG8 309 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 ABHD12BQ7Z5M8 362 aaPredicted RBP11.22□□□□□ -0.61
LINC00643-202ENST00000553426 C17orf78Q8N4C9 275 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 C1orf162Q8NEQ5 155 aaPredicted RBP11.22□□□□□ -0.61
LINC00643-202ENST00000553426 RHNO1Q9BSD3 238 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 SF3B5Q9BWJ5 86 aaKnown RBP11.22□□□□□ -0.61
LINC00643-202ENST00000553426 ADAM19Q9H013 955 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 RAD21L1Q9H4I0 556 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 FKRPQ9H9S5 495 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 AMDHD2Q9Y303 409 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 FLVCR1Q9Y5Y0 555 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 SLC25A15Q9Y619 301 aa11.22□□□□□ -0.61
LINC00643-202ENST00000553426 A0A096LPI6 279 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 A0A0G2JPF8 293 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 A0A1W2PR80 420 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 A8MVM7 634 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 KIAA1324LA8MWY0 1029 aaPredicted RBP11.21□□□□□ -0.61
LINC00643-202ENST00000553426 HNRNPCL2B2RXH8 293 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 HNRNPCL3B7ZW38 293 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 HNRNPCL1O60812 293 aaKnown RBP11.21□□□□□ -0.61
LINC00643-202ENST00000553426 VAMP5O95183 116 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 IGHV4-39P01824 125 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 C1QCP02747 245 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 BCHEP06276 602 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 GKN3PP0CG01 181 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 ZCCHC18P0CG32 403 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 HNRNPCL4P0DMR1 293 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 IMPDH2P12268 514 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 ETFAP13804 333 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 MPGP29372 298 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 FABP6P51161 128 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 POLR2JP52435 117 aaKnown RBP11.21□□□□□ -0.61
LINC00643-202ENST00000553426 NUDT6P53370 316 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 DSCR9P59020 149 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 MAGOHP61326 146 aaKnown RBP11.21□□□□□ -0.61
LINC00643-202ENST00000553426 PLAURQ03405 335 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 CEACAM7Q14002 265 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 SLC17A1Q14916 467 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 OR7A5Q15622 319 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 C9orf135Q5VTT2 229 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 TMEM225Q6GV28 225 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF836Q6ZNA1 936 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 AAED1Q7RTV5 226 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 GPAT4Q86UL3 456 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 PRIMA1Q86XR5 153 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 VRK2Q86Y07 508 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 MIER2Q8N344 545 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 MUC15Q8N387 334 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 POMGNT2Q8NAT1 580 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 OR52E4Q8NGH9 312 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 SLC38A5Q8WUX1 472 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 TMEM45BQ96B21 275 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 PIF1Q9H611 641 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 SDR39U1Q9NRG7 319 aaPredicted RBP11.21□□□□□ -0.61
LINC00643-202ENST00000553426 CBLN4Q9NTU7 201 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 RLIMQ9NVW2 624 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 ADPRHL2Q9NX46 363 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 B3GALT5Q9Y2C3 310 aa11.21□□□□□ -0.61
LINC00643-202ENST00000553426 IFT52Q9Y366 437 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms