RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 DUSP22Q9NRW4 184 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 FBXO34Q9NWN3 711 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 SIT1Q9Y3P8 196 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 KCNK2O95069 426 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 S100A9P06702 114 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 PITPNBP48739 271 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 CSRP3P50461 194 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 AFF3P51826 1226 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 PSMA6P60900 246 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 NXNL2Q5VZ03 156 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 LRRC20Q8TCA0 184 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 CHPT1Q8WUD6 406 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 AKAP1Q92667 903 aaKnown RBP eCLIP13.86□□□□□ -0.19
CUX1-214ENST00000550008 INIPQ9NRY2 104 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 ASB6Q9NWX5 421 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 CCDC59Q9P031 241 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 TRBV5-3A0A0A0MS03 114 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 FRKP42685 505 aaPredicted RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 MELKQ14680 651 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 NKAPLQ5M9Q1 402 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 RHBDD1Q8TEB9 315 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 THAP7Q9BT49 309 aaPredicted RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 ANK1P16157 1881 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 GPR179Q6PRD1 2367 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 MYO16Q9Y6X6 1858 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 RGPD4Q7Z3J3 1758 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 MEIOCA2RUB1 952 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 CLUP10909 449 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 CHRNB1P11230 501 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 GABRA5P31644 462 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 ART1P52961 327 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 ZNF620Q6ZNG0 422 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 C16orf52Q8NHV5 167 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 ACOT12Q8WYK0 555 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 COX14Q96I36 57 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 OR14A2Q96R54 314 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 UBE2ZQ9H832 354 aaPredicted RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 UPB1Q9UBR1 384 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 A0A1W2PPC4 97 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 H2AFB2P0C5Z0 115 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 PAPD4Q6PIY7 484 aaKnown RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 PPP1R3BQ86XI6 285 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 LMF2Q9BU23 707 aaKnown RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 RBM38Q9H0Z9 239 aaKnown RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 C2orf42Q9NWW7 574 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 KLHL9Q9P2J3 617 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 SDK2Q58EX2 2172 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 CASRP41180 1078 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 GNG2P59768 71 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 SNRPGP62308 76 aaKnown RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 NKPD1Q17RQ9 610 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 VN1R4Q7Z5H5 301 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 RNF113BQ8IZP6 322 aaKnown RBP13.85□□□□□ -0.19
CUX1-214ENST00000550008 TM9SF4Q92544 642 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 SLC6A14Q9UN76 642 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 A4GNTQ9UNA3 340 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 BOLA1Q9Y3E2 137 aa13.85□□□□□ -0.19
CUX1-214ENST00000550008 SELENOFO60613 162 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 CYB5AP00167 134 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 SOD1P00441 154 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 Q6ZNX1 250 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 CAMKMTQ7Z624 323 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 LRRC56Q8IYG6 542 aaPredicted RBP13.84□□□□□ -0.19
CUX1-214ENST00000550008 NANOGP1Q8N7R0 232 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 DYNC2LI1Q8TCX1 351 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 LCORQ96JN0 433 aaPredicted RBP13.84□□□□□ -0.19
CUX1-214ENST00000550008 OR2A14Q96R47 310 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 SLC6A7Q99884 636 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 PHF7Q9BWX1 381 aaPredicted RBP13.84□□□□□ -0.19
CUX1-214ENST00000550008 LYRM4Q9HD34 91 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 F5H5K5 113 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 IL33O95760 270 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 HTR1FP30939 366 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 ZFP36L2P47974 494 aaKnown RBP13.84□□□□□ -0.19
CUX1-214ENST00000550008 PTH2RP49190 550 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 CTF1Q16619 201 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 MPEG1Q2M385 716 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 CA13Q8N1Q1 262 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 CCDC120Q96HB5 630 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 PGAM5Q96HS1 289 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 TEAD3Q99594 435 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 ELOVL3Q9HB03 270 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 C12orf4Q9NQ89 552 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 ANKRD10Q9NXR5 420 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 SLC6A5Q9Y345 797 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 K7EQS6 105 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 MRPL19P49406 292 aaKnown RBP13.84□□□□□ -0.19
CUX1-214ENST00000550008 SNU13P55769 128 aaKnown RBP13.84□□□□□ -0.19
CUX1-214ENST00000550008 SNTA1Q13424 505 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 C14orf28Q4W4Y0 310 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 FCRLAQ7L513 359 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 SLC7A5P1Q8MH63 180 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 FAM26EQ8N5C1 309 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 ASCC1Q8N9N2 400 aaKnown RBP13.84□□□□□ -0.19
CUX1-214ENST00000550008 GALNT6Q8NCL4 622 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 LDAHQ9H6V9 325 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 SRPK3Q9UPE1 567 aa13.84□□□□□ -0.19
CUX1-214ENST00000550008 SPTY2D1-AS1A0A0U1RR47 76 aa13.83□□□□□ -0.19
CUX1-214ENST00000550008 DNASE1P24855 282 aa13.83□□□□□ -0.19
CUX1-214ENST00000550008 GIFP27352 417 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms