RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SLC38A4Q969I6 547 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 CMTM5Q96DZ9 223 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 ZNF559Q9BR84 538 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 TACO1Q9BSH4 297 aaKnown RBP11.54□□□□□ -0.56
VPS28-216ENST00000533806 TRIM2Q9C040 744 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 MCCC2Q9HCC0 563 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 KLHL9Q9P2J3 617 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 GMPR2Q9P2T1 348 aaKnown RBP11.54□□□□□ -0.56
VPS28-216ENST00000533806 TESQ9UGI8 421 aaKnown RBP11.54□□□□□ -0.56
VPS28-216ENST00000533806 ARL2BPQ9Y2Y0 163 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 OTOGQ6ZRI0 2925 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 IGKV1D-42A0A075B6H8 117 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 A0A0B4J2E0 115 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 A0A1B0GX12 115 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 TUBAL3A6NHL2 446 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 FTCDNL1E5RQL4 147 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 NME4O00746 187 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 EIF1BO60739 113 aaKnown RBP11.53□□□□□ -0.56
VPS28-216ENST00000533806 SHOX2O60902 331 aaPredicted RBP11.53□□□□□ -0.56
VPS28-216ENST00000533806 LYPD3O95274 346 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 THY1P04216 161 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 FPR1P21462 350 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 EDNRAP25101 427 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 UGT2B10P36537 528 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 CPA2P48052 419 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 KRTAP10-9P60411 292 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 SLC35A1P78382 337 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 ULK3Q6PHR2 472 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 PAQR6Q6TCH4 344 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 TFAP2EQ6VUC0 442 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 LINC00114Q6XXX2 140 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 STAC2Q6ZMT1 411 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 C22orf34Q6ZV56 151 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 ARPINQ7Z6K5 226 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 TSPYL5Q86VY4 417 aaPredicted RBP11.53□□□□□ -0.56
VPS28-216ENST00000533806 CCDC103Q8IW40 242 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 GABRG1Q8N1C3 465 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 OR52E4Q8NGH9 312 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 OR6T1Q8NGN1 323 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 LINC01560Q8TB33 94 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 DNAJA4Q8WW22 397 aaPredicted RBP11.53□□□□□ -0.56
VPS28-216ENST00000533806 DNAJA3Q96EY1 480 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 DACH2Q96NX9 599 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 ZNF300Q96RE9 604 aaPredicted RBP11.53□□□□□ -0.56
VPS28-216ENST00000533806 CCT8L2Q96SF2 557 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 PTDSS2Q9BVG9 487 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 PCDHAC1Q9H158 963 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 KLHL28Q9NXS3 571 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 ABCD2Q9UBJ2 740 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 AP3M1Q9Y2T2 418 aa11.53□□□□□ -0.56
VPS28-216ENST00000533806 CACNA1DQ01668 2161 aa11.52□□□□□ -0.56
VPS28-216ENST00000533806 A0A087WUJ7 227 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 ELOVL7A1L3X0 281 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 M0R3H8 397 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 CTAG2O75638 210 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 GPIP06744 558 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 PNMTP11086 282 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 EPXP11678 715 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 KDELR2P33947 212 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 IDUAP35475 653 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 OR3A2P47893 321 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 RGS8P57771 180 aaPredicted RBP11.52□□□□□ -0.57
VPS28-216ENST00000533806 OR2B6P58173 313 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 TLE4Q04727 773 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 CEACAM7Q14002 265 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 SLC17A1Q14916 467 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 OR1Q1Q15612 314 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 TMEM201Q5SNT2 666 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 SWT1Q5T5J6 900 aaKnown RBP11.52□□□□□ -0.57
VPS28-216ENST00000533806 C1orf140Q5VVS0 124 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 BEND4Q6ZU67 534 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 RBM45Q8IUH3 476 aaKnown RBP11.52□□□□□ -0.57
VPS28-216ENST00000533806 MICU2Q8IYU8 434 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 OR2T12Q8NG77 320 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 MFSD8Q8NHS3 518 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 RASSF5Q8WWW0 418 aa11.52□□□□□ -0.57
VPS28-216ENST00000533806 KTI12Q96EK9 354 aaPredicted RBP11.52□□□□□ -0.57
VPS28-216ENST00000533806 AQP7P3A6NL99 342 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 C16orf97H3BN30 126 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 FAM107AO95990 144 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 POU2F1P14859 743 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 CPOXP36551 454 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 NUDT2P50583 147 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 SLC7A2P52569 658 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 CDH12P55289 794 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 LIPEQ05469 1076 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 ALG10BQ5I7T1 473 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 ZNF613Q6PF04 617 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 TMEM99Q8N816 258 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 ZIC4Q8N9L1 334 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 PIGXQ8TBF5 258 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 ZNF775Q96BV0 537 aaPredicted RBP11.51□□□□□ -0.57
VPS28-216ENST00000533806 ZHX1-C8orf76Q96EF9 292 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 SLC47A1Q96FL8 570 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 LURAP1Q96LR2 239 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 WFIKKN1Q96NZ8 548 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 LRRC37BQ96QE4 947 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 MCHR1Q99705 422 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 C12orf49Q9H741 205 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 TMEM27Q9HBJ8 222 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms