RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MED11Q9P086 117 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SNTNA6NMZ2 147 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 ITGA3P26006 1051 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SLC6A6P31641 620 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 CDH15P55291 814 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 PRPS1P60891 318 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SLC35A2P78381 396 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 TMEM44Q2T9K0 475 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SLC25A53Q5H9E4 307 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 CLEC12AQ5QGZ9 265 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 BICRALQ6AI39 1079 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 OR5M10Q6IEU7 315 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SIRT6Q8N6T7 355 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 PSMF1Q92530 271 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 NTNG2Q96CW9 530 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 MRGPRX4Q96LA9 322 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 NDEL1Q9GZM8 345 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 UBQLN3Q9H347 655 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 NDUFA13Q9P0J0 144 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SNX5Q9Y5X3 404 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 TMED7-TICAM2A0A0A6YYA0 188 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 C2orf72A6NCS6 295 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 C17orf51A8MQB3 221 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 A8MVM7 634 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 PTGES3LE9PB15 166 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 XPNPEP2O43895 674 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 NDUFB2O95178 105 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 GRK5P34947 590 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 ZNF74Q16587 644 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 LNX2Q8N448 690 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 TCEANCQ8N8B7 351 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 FADS6Q8N9I5 356 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 FDCSPQ8NFU4 85 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 TMEM163Q8TC26 289 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 ZNF524Q96C55 264 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 WBP1Q96G27 269 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 PLEKHA8Q96JA3 519 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 KLHDC3Q9BQ90 382 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 TMED7Q9Y3B3 224 aa19.21■□□□□ 0.67
VPS28-212ENST00000530836 TRAV36DV7A0A075B6V5 113 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 A0A087WZY1 265 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 DPPA5A6NC42 116 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 CLCA1A8K7I4 914 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 SUSD5O60279 629 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 CH25HO95992 272 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 MT-ATP6P00846 226 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 FAM87AP0C7U9 286 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 CASRP41180 1078 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 CYB561P49447 251 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 EGR4Q05215 589 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 SMN1Q16637 294 aaKnown RBP19.2■□□□□ 0.66
VPS28-212ENST00000530836 ABHD17BQ5VST6 288 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 SLC46A3Q7Z3Q1 461 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 ADGRG3Q86Y34 549 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 PLCZ1Q86YW0 608 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 OR2M3Q8NG83 312 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 OR4K17Q8NGC6 315 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 OR6S1Q8NH40 331 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 OR51A7Q8NH64 312 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 MYDGFQ969H8 173 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 IL4I1Q96RQ9 567 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 FKRPQ9H9S5 495 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 NANSQ9NR45 359 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 STMN3Q9NZ72 180 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 CNOT2Q9NZN8 540 aaKnown RBP19.2■□□□□ 0.66
VPS28-212ENST00000530836 AASSQ9UDR5 926 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 TUBD1Q9UJT1 453 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 ZNF229Q9UJW7 825 aa19.2■□□□□ 0.66
VPS28-212ENST00000530836 PCDHGA9Q9Y5G4 932 aaKnown RBP19.2■□□□□ 0.66
VPS28-212ENST00000530836 MED13Q9UHV7 2174 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 EFCAB10A6NFE3 127 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 MKRN2OSH3BPM6 223 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 M0R3G1 203 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 BHLHE40O14503 412 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 SURF4O15260 269 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 TLX2O43763 284 aaPredicted RBP19.19■□□□□ 0.66
VPS28-212ENST00000530836 OR2T1O43869 369 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 P04436 131 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 FKBP2P26885 142 aaKnown RBP19.19■□□□□ 0.66
VPS28-212ENST00000530836 ADH6P28332 368 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 EIF1P41567 113 aaKnown RBP19.19■□□□□ 0.66
VPS28-212ENST00000530836 FXYD6P3P58550 94 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 EXD3Q8N9H8 876 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 OR4Q3Q8NH05 313 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 TMEM41AQ96HV5 264 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 TNFRSF13CQ96RJ3 184 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 FAM192AQ9GZU8 254 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 SACM1LQ9NTJ5 587 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 GPR83Q9NYM4 423 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 PSORS1C1Q9UIG5 152 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 RPL36Q9Y3U8 105 aaKnown RBP19.19■□□□□ 0.66
VPS28-212ENST00000530836 PCDHGB1Q9Y5G3 927 aa19.19■□□□□ 0.66
VPS28-212ENST00000530836 TRAV27A0A087WT01 109 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 ZNF208O43345 1280 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 RGS10O43665 173 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 PRKYO43930 277 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 NPIPB7O75200 414 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 CCL3P10147 92 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 RPS4XP62701 263 aaKnown RBP19.18■□□□□ 0.66
VPS28-212ENST00000530836 PRAMEF20Q5VT98 475 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms