RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 UGT1A4P22310 534 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 LHCGRP22888 699 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 FASP25445 335 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP5A1P25705 553 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IVDP26440 423 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 LOXP28300 417 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HTR2CP28335 458 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GCAP28676 217 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IL12AP29459 219 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDHA2P29803 388 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HNRNPH3P31942 346 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 KDELR2P33947 212 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EVI2BP34910 448 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UGT1A3P35503 534 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAP2K2P36507 400 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARR3P36575 388 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CFHR2P36980 270 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HPCAL1P37235 193 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMP12P39900 470 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC26A3P40879 764 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OPRD1P41143 372 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAP3K8P41279 467 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELK3P41970 407 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDKN2CP42773 168 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC1A2P43004 574 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC1A1P43005 524 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAGEA5P43359 124 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSFMP43897 325 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR1P46091 355 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 BDKRB1P46663 353 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNPDA1P46926 289 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZFP36L2P47974 494 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TFPI2P48307 235 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSPA13P48723 471 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DNASE1L1P49184 302 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TGM4P49221 684 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRLHRP49683 370 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RGS6P49758 472 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HLCSP50747 726 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DNA2P51530 1060 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSPA2P54652 639 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EMP2P54851 167 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UGT2B15P54855 530 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HMGCS2P54868 508 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDH11P55287 796 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAG2P55895 527 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM50BP56557 158 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN6P56747 220 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 BACE1P56817 501 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMPRSS3P57727 454 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 FBXW4P57775 412 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR1D5P58170 312 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2B6P58173 313 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 LINC00205P59089 165 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAS2R39P59534 338 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAS2R60P59551 318 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPX6P59796 221 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCDC1P59894 354 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2B8PP59922 312 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARPC4P59998 168 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBE2G2P60604 165 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB14P61106 215 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABCE1P61221 599 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERVK-16P61578 105 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 VBP1P61758 197 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 B2MP61769 119 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARF6P62330 175 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 VSNL1P62760 191 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERVK-25P63136 954 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ADARB1P78563 741 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPS22P82650 360 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 REEP5Q00765 189 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GUCY2DQ02846 1103 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAX2Q02962 417 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 KDSRQ06136 332 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF33AQ06730 810 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RGS1Q08116 209 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBBP4Q09028 425 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IFFO1Q0D2I5 559 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARL16Q0P5N6 197 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB40BQ12829 278 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF155Q12901 538 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ILF3Q12906 894 aaKnown RBP eCLIP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRSF9Q13242 221 aaKnown RBP eCLIP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIGQ13278 110 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PMS2P3Q13401 168 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ILKQ13418 452 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ART3Q13508 389 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ITPK1Q13572 414 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EIF2B1Q14232 305 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GCKRQ14397 625 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIGHQ14442 188 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBM39Q14498 530 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNMTQ14749 295 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DS3Q14952 304 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PON2Q15165 354 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB35Q15286 201 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMED2Q15363 201 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SF3B4Q15427 424 aaKnown RBP eCLIP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR4D1Q15615 310 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms