RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 SEC24CP53992 1094 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 SLC35A1P78382 337 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 HOXC5Q00444 222 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 SF3A3Q12874 501 aaKnown RBP eCLIP8.61□□□□□ -1.03
RNF4-221ENST00000513643 VEZF1Q14119 521 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 SLC17A1Q14916 467 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 MAPRE2Q15555 327 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 NRF1Q16656 503 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 VMACQ2NL98 169 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 TMEM201Q5SNT2 666 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 FAM91A1Q658Y4 838 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 REP15Q6BDI9 236 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 PAQR6Q6TCH4 344 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 SEZ6L2Q6UXD5 910 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 NHLRC1Q6VVB1 395 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 SNX32Q86XE0 403 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 KRT73Q86Y46 540 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 TREML1Q86YW5 311 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 CCDC103Q8IW40 242 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 SLC30A8Q8IWU4 369 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 ZIC4Q8N9L1 334 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 TAMM41Q96BW9 452 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 DDIT4LQ96D03 193 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 REXO5Q96IC2 774 aaKnown RBP8.61□□□□□ -1.03
RNF4-221ENST00000513643 ZNF300Q96RE9 604 aaPredicted RBP8.61□□□□□ -1.03
RNF4-221ENST00000513643 ZNF607Q96SK3 696 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 SH3GL1Q99961 368 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 PCDHAC1Q9H158 963 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 PIF1Q9H611 641 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 ARMCX1Q9P291 453 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 NDRG3Q9UGV2 375 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 CADP27708 2225 aa8.61□□□□□ -1.03
RNF4-221ENST00000513643 A0A0B4J2E0 115 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 A0A1B0GWA3 101 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 A0A1B0GX12 115 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 AQP7P3A6NL99 342 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 PDLIM1O00151 329 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 MRASO14807 208 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 KLF4O43474 513 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 CCDC22O60826 627 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 THY1P04216 161 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 TFPIP10646 304 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 CCNA2P20248 432 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 COX5AP20674 150 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 FPR1P21462 350 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 CXCR1P25024 350 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 LSP1P33241 339 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 CPOXP36551 454 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 COPZ1P61923 177 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 BNIP2Q12982 314 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 P2RY6Q15077 328 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 NPTX1Q15818 432 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 SFRP5Q5T4F7 317 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 C1orf140Q5VVS0 124 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 Q6ZT83 130 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 SPATA21Q7Z572 469 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 PIGWQ7Z7B1 504 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 GALNT5Q7Z7M9 940 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 PATL1Q86TB9 770 aaKnown RBP8.6□□□□□ -1.03
RNF4-221ENST00000513643 TSPYL5Q86VY4 417 aaPredicted RBP8.6□□□□□ -1.03
RNF4-221ENST00000513643 CDC20BQ86Y33 519 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 ARMC8Q8IUR7 673 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 CADM2Q8N3J6 435 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 OR4D11Q8NGI4 311 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 OR6S1Q8NH40 331 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 MFSD8Q8NHS3 518 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 PIGXQ8TBF5 258 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 DNAJA4Q8WW22 397 aaPredicted RBP8.6□□□□□ -1.03
RNF4-221ENST00000513643 SLC38A4Q969I6 547 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 BOD1Q96IK1 185 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 SF3B5Q9BWJ5 86 aaKnown RBP8.6□□□□□ -1.03
RNF4-221ENST00000513643 PRR14Q9BWN1 585 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 HDHD5Q9BXW7 423 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 TRIM2Q9C040 744 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 CLEC4MQ9H2X3 399 aaPredicted RBP8.6□□□□□ -1.03
RNF4-221ENST00000513643 CMTM6Q9NX76 183 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 FAM53CQ9NYF3 392 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 TESQ9UGI8 421 aaKnown RBP8.6□□□□□ -1.03
RNF4-221ENST00000513643 ANGPT4Q9Y264 503 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 CAPN7Q9Y6W3 813 aa8.6□□□□□ -1.03
RNF4-221ENST00000513643 A0A087WUJ7 227 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 LOC102725191A0A1B0GVB3 256 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 GMNCA6NCL1 334 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 GPR171O14626 319 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 GPIP06744 558 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 COX4I1P13073 169 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 AQP1P29972 269 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 DNAJA1P31689 397 aaKnown RBP8.59□□□□□ -1.03
RNF4-221ENST00000513643 IDUAP35475 653 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 OR2B6P58173 313 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 ITGADQ13349 1161 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 CEACAM7Q14002 265 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 POU4F3Q15319 338 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 OR1Q1Q15612 314 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 CYP51A1Q16850 503 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 SWT1Q5T5J6 900 aaKnown RBP8.59□□□□□ -1.03
RNF4-221ENST00000513643 ULK3Q6PHR2 472 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 HACD2Q6Y1H2 254 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 STK32CQ86UX6 486 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 CXorf67Q86X51 503 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms