RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CNIH4Q9P003 139 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 IL17BQ9UHF5 180 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 SHPKQ9UHJ6 478 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 IGKV6-21A0A0C4DH24 114 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 A0A1W2PPE2 198 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 M0R3H8 397 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 CLDN11O75508 207 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 FABP4P15090 132 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 TAF6P49848 677 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ST8SIA6P61647 398 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 SLBPQ14493 270 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM69Q5SWH9 247 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ABHD13Q7L211 337 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 TIPARPQ7Z3E1 657 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 STEAP2Q8NFT2 490 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 GPR148Q8TDV2 347 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 INSM2Q96T92 566 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 MICU1Q9BPX6 476 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 TRIM36Q9NQ86 728 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 OR2S2Q9NQN1 319 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 TNFSF18Q9UNG2 199 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC22A14Q9Y267 594 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC35A3Q9Y2D2 325 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 HS3ST4Q9Y661 456 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 SIP14410 1827 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 DAPL1A0PJW8 107 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 C9JQL5 133 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ANXA5P08758 320 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 QDPRP09417 244 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ADCYAP1R1P41586 468 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 LHX1P48742 406 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF84P51523 738 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 EPHB3P54753 998 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 NRG3P56975 720 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 IL10RAQ13651 578 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 CRY2Q49AN0 593 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF385BQ569K4 471 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 DACT2Q5SW24 774 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 GPR32P1Q8NGA4 272 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 OR8S1Q8NH09 359 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 LRFN5Q96NI6 719 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 SELENOIQ9C0D9 397 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ATG10Q9H0Y0 220 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC32A1Q9H598 525 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 MAN2C1Q9NTJ4 1040 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ABRACLQ9P1F3 81 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 GULP1Q9UBP9 304 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 VPS29Q9UBQ0 182 aa11.14□□□□□ -0.63
LIMCH1-213ENST00000511496 ANKRD20A5PA0PJZ0 165 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 RNF222A6NCQ9 220 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 MCIDASD6RGH6 385 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 FOXE1O00358 373 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 APBB3O95704 486 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 LPOP22079 712 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 CASRP41180 1078 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 RPIAP49247 311 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 UBXN11Q5T124 520 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 LIN54Q6MZP7 749 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 C11orf87Q6NUJ2 197 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 DHRS11Q6UWP2 260 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 ACOT7LQ6ZUV0 252 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 POGLUT1Q8NBL1 392 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 SEMA6DQ8NFY4 1073 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 SCAMP5Q8TAC9 235 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 SECTM1Q8WVN6 248 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 PCED1BQ96HM7 432 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 SEMA6CQ9H3T2 930 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 NPFFR2Q9Y5X5 522 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 SMAD6O43541 496 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 NPM3O75607 178 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 MRPL3P09001 348 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 LIPCP11150 499 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 TIMP2P16035 220 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 ATP1B3P54709 279 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 MC1RQ01726 317 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 CHIT1Q13231 466 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 TUSC3Q13454 348 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 FZD5Q13467 585 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF630Q2M218 657 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 PCGF3Q3KNV8 242 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC25A30Q5SVS4 291 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 ACBD7Q8N6N7 88 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 PHYHIPQ92561 330 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 NTN1O95631 604 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 PTGER3P43115 390 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 DOC2AQ14183 400 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 MAPK14Q16539 360 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 KHDRBS2Q5VWX1 349 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 DMRTA1Q5VZB9 504 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 GAREM2Q75VX8 874 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM99Q8N816 258 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 SDR9C7Q8NEX9 313 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 MESP1Q9BRJ9 268 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF649Q9BS31 505 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 RGCCQ9H4X1 137 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 MED20Q9H944 212 aa11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 MRPL17Q9NRX2 175 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-213ENST00000511496 A0A1W2PRQ8 180 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 RTCAO00442 366 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 CTDSPLO15194 276 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms