RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MAGEB1P43366 347 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 KIR3DL2P43630 455 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 HCAR3P49019 387 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 NPY2RP49146 381 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 DHPSP49366 369 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 PLK1P53350 603 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PRRX1P54821 245 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 YBEYP58557 167 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 RPL26P61254 145 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 AP1S1P61966 158 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SKP1P63208 163 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 GNGT1P63211 74 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 GLO1Q04760 184 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SCN1BQ07699 218 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 C2orf54Q08AI8 447 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CHIT1Q13231 466 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PPIL2Q13356 520 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 HERPUD1Q15011 391 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TGFBIQ15582 683 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 KCNJ8Q15842 424 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CAMK4Q16566 473 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 DUSP7Q16829 419 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SMU1Q2TAY7 513 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD20A4Q4UJ75 823 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 ACER2Q5QJU3 275 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 MARCH8Q5T0T0 291 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 ELP2Q6IA86 826 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PYHIN1Q6K0P9 492 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TAS2R42Q7RTR8 314 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 RABEPKQ7Z6M1 372 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TMCO2Q7Z6W1 182 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 SETD3Q86TU7 594 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 TAC4Q86UU9 113 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 MEX3DQ86XN8 651 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 VSTM4Q8IW00 320 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 AQP12AQ8IXF9 295 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 UBL4BQ8N7F7 174 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 MRPL43Q8N983 215 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 C12orf29Q8N999 325 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TTC29Q8NA56 475 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 OR7G3Q8NG95 312 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 OR6Q1Q8NGQ2 317 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 UBA3Q8TBC4 463 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PAQR8Q8TEZ7 354 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 NAT14Q8WUY8 206 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 KCTD4Q8WVF5 259 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CAPSLQ8WWF8 208 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SLC13A3Q8WWT9 602 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TNFRSF14Q92956 283 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 C14orf79Q96F83 325 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 BIRC8Q96P09 236 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CCNL2Q96S94 520 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 C17orf62Q9BQA9 187 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 MTG1Q9BT17 334 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 TEKT3Q9BXF9 490 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SLC26A1Q9H2B4 701 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 BLZF1Q9H2G9 400 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 COPS7BQ9H9Q2 264 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 TREM1Q9NP99 234 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 MID1IP1Q9NPA3 183 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 NT5MQ9NPB1 228 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SLC35D1Q9NTN3 355 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 UFSP2Q9NUQ7 469 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PARVAQ9NVD7 372 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 ETNK2Q9NVF9 386 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 HYPKQ9NX55 129 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SLCO1C1Q9NYB5 712 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 AKAP7Q9P0M2 348 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 ZNF223Q9UK11 482 aaPredicted RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 LIPT1Q9Y234 373 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PIN4Q9Y237 131 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 EIF3LQ9Y262 564 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 SLC22A14Q9Y267 594 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 GMPPBQ9Y5P6 360 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 USH1CQ9Y6N9 552 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 V9GYQ6 96 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 RIMS2Q9UQ26 1411 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 AK9Q5TCS8 1911 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 COL1A2P08123 1366 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TOP2AP11388 1531 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 MAP3K1Q13233 1512 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 LMTK2Q8IWU2 1503 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PLB1Q6P1J6 1458 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SMARCA4P51532 1647 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ESYT2A0FGR8 921 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PQLC2LA1A4F0 135 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ILVBLA1L0T0 632 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SMIM30A4D0T7 59 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 C5orf51A6NDU8 294 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 OOEPA6NGQ2 149 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 IQCF5A8MTL0 148 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 A8MXQ7 604 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 FAM25AB3EWG3 89 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 FAM25CB3EWG5 89 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 FAM25GB3EWG6 89 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 KBTBD13C9JR72 458 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 hCG_2039718K7EN88 272 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 TXNDC9O14530 226 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 RRP8O43159 456 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 AKR7A2O43488 359 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms