RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 OR2T11Q8NH01 316 aa12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 CLDND2Q8NHS1 167 aa12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 ZNF563Q8TA94 476 aa12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 LRRC37BQ96QE4 947 aa12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 SF3B5Q9BWJ5 86 aaKnown RBP12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 ZNF350Q9GZX5 532 aa12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 PCDHGB1Q9Y5G3 927 aa12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 PTGDR2Q9Y5Y4 395 aa12.31□□□□□ -0.44
PRPF40A-211ENST00000493468 VWFP04275 2813 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 TRAV20A0A0B4J274 112 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 DUXAA6NLW8 204 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 LSM1O15116 133 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 PNPP00491 289 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 BCKDHAP12694 445 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 HOXB1P14653 301 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 CDH2P19022 906 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 THBS4P35443 961 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 HTR3AP46098 478 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 MAP2K6P52564 334 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 FOXL1Q12952 345 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 GPR68Q15743 365 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 LSM12Q3MHD2 195 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 SPDYE7PQ495Y7 208 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 SLC9B1Q4ZJI4 515 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 EMBQ6PCB8 327 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 ZYG11AQ6WRX3 759 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 AAED1Q7RTV5 226 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 ZNF572Q7Z3I7 529 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 SPATA21Q7Z572 469 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 ZIC4Q8N9L1 334 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 OR9K2Q8NGE7 335 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 OR5D16Q8NGK9 328 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 ACMSDQ8TDX5 336 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 CKAP2Q8WWK9 683 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 BCL2L2Q92843 193 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 PMM1Q92871 262 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 MRPL24Q96A35 216 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 DDIT4LQ96D03 193 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 EXOSC3Q9NQT5 275 aaKnown RBP12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 CMYA5Q8N3K9 4069 aa12.3□□□□□ -0.44
PRPF40A-211ENST00000493468 WNK2Q9Y3S1 2297 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 A0A087WUV0 522 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 OR6C65A6NJZ3 312 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 ZNF587BE7ETH6 402 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 G3V2L1 256 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 FCMRO60667 390 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 GAAP10253 952 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 SAGP10523 405 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 MYL2P10916 166 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 LAMP1P11279 417 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 IMPDH2P12268 514 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 ACHEP22303 614 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 GPR6P46095 362 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 EVX1P49640 407 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 DNAJB13P59910 316 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 SLC7A5Q01650 507 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 ARHGAP11BQ3KRB8 267 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 CLEC6AQ6EIG7 209 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 TREML4Q6UXN2 200 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 THSD4Q6ZMP0 1018 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 C1orf229Q6ZS94 237 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 C1QL2Q7Z5L3 287 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 HOMEZQ8IX15 550 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 CDK20Q8IZL9 346 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 OR7A2PQ8NGA2 310 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 DNAJA3Q96EY1 480 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 ZNF385AQ96PM9 386 aaKnown RBP12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 SEC61A2Q9H9S3 476 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 G6PC2Q9NQR9 355 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 ATAD3AQ9NVI7 634 aa12.29□□□□□ -0.44
PRPF40A-211ENST00000493468 EXOC1LA0A1B0GW35 172 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 TMEM114B3SHH9 223 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 LYNX1G3V0Z9 82 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 C6orf47O95873 294 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 LGI1O95970 557 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 ADRA2AP08913 450 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 LYNX1P0DP58 116 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 HKR1P10072 659 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 GCAP28676 217 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 SH3BGRP55822 239 aaPredicted RBP12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 MAPK14Q16539 360 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 CFAP157Q5JU67 520 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 ELFN2Q5R3F8 820 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 OTUD3Q5T2D3 398 aaPredicted RBP12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 LIPMQ5VYY2 423 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 REP15Q6BDI9 236 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 CNPY4Q8N129 248 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 ZDHHC22Q8N966 263 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 AURKBQ96GD4 344 aaPredicted RBP12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 NELFAQ9H3P2 528 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 TUBB1Q9H4B7 451 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 SERHL2Q9H4I8 314 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 LPAR2Q9HBW0 351 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 ESM1Q9NQ30 184 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 POLE3Q9NRF9 147 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 MKLN1Q9UL63 735 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 EMCNQ9ULC0 261 aa12.28□□□□□ -0.44
PRPF40A-211ENST00000493468 TMED7-TICAM2A0A0A6YYA0 188 aa12.27□□□□□ -0.45
PRPF40A-211ENST00000493468 IGHV2OR16-5A0A0B4J2B6 119 aa12.27□□□□□ -0.45
PRPF40A-211ENST00000493468 AQP7P3A6NL99 342 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms