RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZNF239Q16600 458 aaKnown RBP9.18□□□□□ -0.94
USP39-215ENST00000481409 RAET1LQ5VY80 246 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 SLC27A4Q6P1M0 643 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 SMARCD3Q6STE5 483 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 ZNF620Q6ZNG0 422 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 FAM83FQ8NEG4 500 aaPredicted RBP9.18□□□□□ -0.94
USP39-215ENST00000481409 PFN4Q8NHR9 129 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 TEX47Q8TBZ9 253 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 FAM46AQ96IP4 442 aaKnown RBP9.18□□□□□ -0.94
USP39-215ENST00000481409 GPX7Q96SL4 187 aaPredicted RBP9.18□□□□□ -0.94
USP39-215ENST00000481409 ASPNQ9BXN1 380 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 ZDHHC11Q9H8X9 412 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 SLC25A19Q9HC21 320 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 FANCFQ9NPI8 374 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 C20orf141Q9NUB4 165 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 NDRG4Q9ULP0 352 aaKnown RBP9.18□□□□□ -0.94
USP39-215ENST00000481409 SIGLEC7Q9Y286 467 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 B3GNT3Q9Y2A9 372 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 B3GALT5Q9Y2C3 310 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 LRCH1Q9Y2L9 728 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 HIF3AQ9Y2N7 669 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 SLC6A5Q9Y345 797 aa9.18□□□□□ -0.94
USP39-215ENST00000481409 A0A0G2JMM0 328 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 A0A1W2PPB8 328 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 A0A1W2PRS3 328 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 MED19A0JLT2 244 aaPredicted RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 OR2M5A3KFT3 312 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 NPIPB13A6NJU9 1138 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 ZAR1LA6NP61 321 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 KIR3DP1A8MWS1 328 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 NPIPB4C9JG80 1138 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 G3V3Y1 287 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 H3BN98 237 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 TAF4O00268 1085 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 IMPA2O14732 288 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 BCKDKO14874 412 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 GMFGO60234 142 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 PTP4A3O75365 173 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 TRAPPC6AO75865 159 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 NDUFB2O95178 105 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 BGLAPP02818 100 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 HMGN1P05114 100 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 POU2F1P14859 743 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 MAKP20794 623 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 FUT4P22083 530 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 MYF6P23409 242 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 GTF2E2P29084 291 aaKnown RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 SLC6A6P31641 620 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 GIPRP48546 466 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 GFRA1P56159 465 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 CDC42P60953 191 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 RPS4XP62701 263 aaKnown RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 PPIAP62937 165 aaKnown RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 CSNK2BP67870 215 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 CXADRP78310 365 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 SLC35A1P78382 337 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 CDK5Q00535 292 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 IL1RL1Q01638 556 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 ZP4Q12836 540 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 PTGES3Q15185 160 aaKnown RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 TOMM20Q15388 145 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 SGCBQ16585 318 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 ESPNLQ6ZVH7 1005 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 USP51Q70EK9 711 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 SLC46A3Q7Z3Q1 461 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 C8orf59Q8N0T1 100 aaPredicted RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 MARVELD2Q8N4S9 558 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 TMEM251Q8N6I4 163 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 OR2T33Q8NG76 320 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 OR5J2Q8NH18 312 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 TAAR8Q969N4 342 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 MIB2Q96AX9 1013 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 ZNF524Q96C55 264 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 ZHX1-C8orf76Q96EF9 292 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 SFXN2Q96NB2 322 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 MBOAT4Q96T53 435 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 PTDSS2Q9BVG9 487 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 YTHDF1Q9BYJ9 559 aaKnown RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 RIBC2Q9H4K1 309 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 TIGARQ9NQ88 270 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 KLHL1Q9NR64 748 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 ALKBH4Q9NXW9 302 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 MRPL39Q9NYK5 338 aaKnown RBP9.17□□□□□ -0.94
USP39-215ENST00000481409 GMPPBQ9Y5P6 360 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 ACACAQ13085 2346 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 PCNX3Q9H6A9 2034 aa9.17□□□□□ -0.94
USP39-215ENST00000481409 TNRC6AQ8NDV7 1962 aaKnown RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 SPTBN4Q9H254 2564 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 LOC102725191A0A1B0GVB3 256 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 A0A1B0GVC2 190 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 PINLYPA6NC86 204 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 C17orf51A8MQB3 221 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 FTCDNL1E5RQL4 147 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 KPNA4O00629 521 aaPredicted RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 CDC42EP2O14613 210 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 PIP5K1CO60331 668 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 VAMP5O95183 116 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 CH25HO95992 272 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 F10P00742 488 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms