RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GTPBP8Q8N3Z3 284 aaPredicted RBP3.9□□□□□ -1.79
UPF3B-203ENST00000478840 SDR9C7Q8NEX9 313 aa3.9□□□□□ -1.79
UPF3B-203ENST00000478840 BRSK1Q8TDC3 778 aa3.9□□□□□ -1.79
UPF3B-203ENST00000478840 SETD7Q8WTS6 366 aaKnown RBP3.9□□□□□ -1.79
UPF3B-203ENST00000478840 GTSF1Q8WW33 167 aa3.9□□□□□ -1.79
UPF3B-203ENST00000478840 ZNF641Q96N77 438 aaPredicted RBP3.9□□□□□ -1.79
UPF3B-203ENST00000478840 KLHDC3Q9BQ90 382 aa3.9□□□□□ -1.79
UPF3B-203ENST00000478840 MTG1Q9BT17 334 aaPredicted RBP3.9□□□□□ -1.79
UPF3B-203ENST00000478840 ILKAPQ9H0C8 392 aaPredicted RBP3.9□□□□□ -1.79
UPF3B-203ENST00000478840 PPA2Q9H2U2 334 aa3.9□□□□□ -1.79
UPF3B-203ENST00000478840 DDX18Q9NVP1 670 aaKnown RBP3.9□□□□□ -1.79
UPF3B-203ENST00000478840 RPL36Q9Y3U8 105 aaKnown RBP3.9□□□□□ -1.79
UPF3B-203ENST00000478840 A0A1B0GU03 582 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 SERTM2A0A1B0GWG4 89 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 LRRIQ4A6NIV6 560 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 HCRTR1O43613 425 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 RFC4P35249 363 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 SCRN3Q0VDG4 424 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 CCDC173Q0VFZ6 552 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 GNMTQ14749 295 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 ARL6IP1Q15041 203 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 AANATQ16613 207 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 MICBQ29980 383 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 OR52E8Q6IFG1 317 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 SLC25A48Q6ZT89 311 aaKnown RBP3.89□□□□□ -1.79
UPF3B-203ENST00000478840 ACOT7LQ6ZUV0 252 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 BZW1Q7L1Q6 419 aaKnown RBP3.89□□□□□ -1.79
UPF3B-203ENST00000478840 NUDCD3Q8IVD9 361 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 NRMQ8IXM6 262 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 OR7G2Q8NG99 324 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 OR4F6Q8NGB9 312 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 TSEN15Q8WW01 171 aaKnown RBP3.89□□□□□ -1.79
UPF3B-203ENST00000478840 DNAJA4Q8WW22 397 aaPredicted RBP3.89□□□□□ -1.79
UPF3B-203ENST00000478840 ELMO1Q92556 727 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 MCUR1Q96AQ8 359 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 FGGYQ96C11 551 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 PLEKHA8Q96JA3 519 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 SIGLEC12Q96PQ1 595 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 PAXXQ9BUH6 204 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 RBKSQ9H477 322 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 APOBEC3BQ9UH17 382 aaKnown RBP3.89□□□□□ -1.79
UPF3B-203ENST00000478840 DCDC2Q9UHG0 476 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 TMCO1Q9UM00 188 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 FLVCR1Q9Y5Y0 555 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 CFAP65Q6ZU64 1925 aaKnown RBP3.89□□□□□ -1.79
UPF3B-203ENST00000478840 WDR19Q8NEZ3 1342 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 SH3TC1Q8TE82 1336 aa3.89□□□□□ -1.79
UPF3B-203ENST00000478840 IGLV8-61A0A075B6I0 122 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 IGHV7-81A0A0B4J1V7 117 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 OR2AG2A6NM03 316 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 C9JVG2 144 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 CASQ2O14958 399 aaPredicted RBP3.88□□□□□ -1.79
UPF3B-203ENST00000478840 MMP1P03956 469 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 CT62P0C5K7 136 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 ANXA8P13928 327 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 VDAC1P21796 283 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 FASP25445 335 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 ANXA13P27216 316 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 OTX1P32242 354 aaPredicted RBP3.88□□□□□ -1.79
UPF3B-203ENST00000478840 MDH2P40926 338 aaKnown RBP3.88□□□□□ -1.79
UPF3B-203ENST00000478840 YAP1P46937 504 aaKnown RBP3.88□□□□□ -1.79
UPF3B-203ENST00000478840 OR5I1Q13606 314 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 C1orf185Q5T7R7 199 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 ANXA8L1Q5VT79 327 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 C11orf71Q6IPW1 123 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 PAMR1Q6UXH9 720 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 GSG1LQ6UXU4 331 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 LRRC31Q6UY01 552 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 FRA10AC1Q70Z53 315 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 PGAP1Q75T13 922 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 PPP1R27Q86WC6 154 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 TPRX1Q8N7U7 411 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 OR13F1Q8NGS4 319 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 RAPGEF5Q92565 580 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.88□□□□□ -1.79
UPF3B-203ENST00000478840 VSIG2Q96IQ7 327 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 PANX2Q96RD6 677 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 TGS1Q96RS0 853 aaKnown RBP3.88□□□□□ -1.79
UPF3B-203ENST00000478840 ATOH8Q96SQ7 321 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 MBOAT4Q96T53 435 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 NMUR2Q9GZQ4 415 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 TMEM185BQ9H7F4 350 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 CRLF2Q9HC73 371 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 PSMC3IPQ9P2W1 217 aaPredicted RBP3.88□□□□□ -1.79
UPF3B-203ENST00000478840 STARD10Q9Y365 291 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 N6AMT1Q9Y5N5 214 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 CSAG2Q9Y5P2 127 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 PLEKHH1Q9ULM0 1364 aa3.88□□□□□ -1.79
UPF3B-203ENST00000478840 COL5A2P05997 1499 aaPredicted RBP3.87□□□□□ -1.79
UPF3B-203ENST00000478840 RALGAPA1Q6GYQ0 2036 aa3.87□□□□□ -1.79
UPF3B-203ENST00000478840 A0A1W2PQ72 361 aa3.87□□□□□ -1.79
UPF3B-203ENST00000478840 OR5B21A6NL26 309 aa3.87□□□□□ -1.79
UPF3B-203ENST00000478840 LOC110117498-PIK3R3F6TDL0 507 aa3.87□□□□□ -1.79
UPF3B-203ENST00000478840 WWP2O00308 870 aa3.87□□□□□ -1.79
UPF3B-203ENST00000478840 CASC3O15234 703 aaKnown RBP3.87□□□□□ -1.79
UPF3B-203ENST00000478840 UGT1A9O60656 530 aa3.87□□□□□ -1.79
UPF3B-203ENST00000478840 LYPLA1O75608 230 aaPredicted RBP3.87□□□□□ -1.79
UPF3B-203ENST00000478840 STAMBPO95630 424 aa3.87□□□□□ -1.79
UPF3B-203ENST00000478840 OXSR1O95747 527 aaPredicted RBP3.87□□□□□ -1.79
UPF3B-203ENST00000478840 SEMG1P04279 462 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms