RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ZNF443Q9Y2A4 671 aaPredicted RBP14.36□□□□□ -0.11
COL9A3-208ENST00000469802 SLC9A8Q9Y2E8 581 aa14.36□□□□□ -0.11
COL9A3-208ENST00000469802 SLC25A15Q9Y619 301 aa14.36□□□□□ -0.11
COL9A3-208ENST00000469802 USH1CQ9Y6N9 552 aa14.36□□□□□ -0.11
COL9A3-208ENST00000469802 FAM234BA2RU67 622 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 SMAD7O15105 426 aaKnown RBP14.35□□□□□ -0.11
COL9A3-208ENST00000469802 MRPL33O75394 65 aaKnown RBP14.35□□□□□ -0.11
COL9A3-208ENST00000469802 BMP2P12643 396 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 CRATP43155 626 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 FOXG1P55316 489 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-208ENST00000469802 RPS26P11Q5JNZ5 115 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-208ENST00000469802 AGBL2Q5U5Z8 902 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 EPGNQ6UW88 154 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 DTX2Q86UW9 622 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 UBE2J2Q8N2K1 259 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 MIER2Q8N344 545 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 GTF2H4Q92759 462 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 TMEM45BQ96B21 275 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 TMEM19Q96HH6 336 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 C7orf26Q96N11 449 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 PAIP1Q9H074 479 aaKnown RBP14.35□□□□□ -0.11
COL9A3-208ENST00000469802 THUMPD1Q9NXG2 353 aaKnown RBP14.35□□□□□ -0.11
COL9A3-208ENST00000469802 HIVEP2P31629 2446 aa14.35□□□□□ -0.11
COL9A3-208ENST00000469802 A0A1W2PP18 115 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 LIPT2A6NK58 231 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 ABCD4O14678 606 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 ANP32DO95626 131 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 GKN3PP0CG01 181 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 IDUAP35475 653 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 FAPQ12884 760 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 ETFDHQ16134 617 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 GABRA6Q16445 453 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 ZSWIM7Q19AV6 140 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 C6orf10Q5SRN2 563 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 PRAMEF8Q5VWM4 474 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 PRAMEF7Q5VXH5 474 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 WBP2NLQ6ICG8 309 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 CASP12Q6UXS9 341 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 CLIP4Q8N3C7 705 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 OR52E4Q8NGH9 312 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 MUS81Q96NY9 551 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 NAA11Q9BSU3 229 aaPredicted RBP14.34□□□□□ -0.11
COL9A3-208ENST00000469802 TRAF4Q9BUZ4 470 aaPredicted RBP14.34□□□□□ -0.11
COL9A3-208ENST00000469802 BCL2L10Q9HD36 194 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 PCDHB14Q9Y5E9 798 aa14.34□□□□□ -0.11
COL9A3-208ENST00000469802 A0A0G2JPF8 293 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 AQP7P3A6NL99 342 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 TMEM229AB2RXF0 380 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 HNRNPCL2B2RXH8 293 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 HNRNPCL3B7ZW38 293 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 HNRNPCL1O60812 293 aaKnown RBP14.33□□□□□ -0.12
COL9A3-208ENST00000469802 CD8AP01732 235 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 GPIP06744 558 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 NUDT7P0C024 238 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 HNRNPCL4P0DMR1 293 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 PRG2P13727 222 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 CDKN1AP38936 164 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 P2RY4P51582 365 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 CDH11P55287 796 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 KRTAP1-1Q07627 177 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 FADDQ13158 208 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 LARS2Q15031 903 aaKnown RBP14.33□□□□□ -0.12
COL9A3-208ENST00000469802 RGNQ15493 299 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 OTUD3Q5T2D3 398 aaPredicted RBP14.33□□□□□ -0.12
COL9A3-208ENST00000469802 OR7E24Q6IFN5 339 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 DNM1P46Q6ZS02 220 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 ZIC4Q8N9L1 334 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 C1orf162Q8NEQ5 155 aaPredicted RBP14.33□□□□□ -0.12
COL9A3-208ENST00000469802 OR52N5Q8NH56 324 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 SLC35B4Q969S0 331 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 RADILQ96JH8 1075 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 SF3B5Q9BWJ5 86 aaKnown RBP14.33□□□□□ -0.12
COL9A3-208ENST00000469802 SPATA9Q9BWV2 254 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 A4GALTQ9NPC4 353 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 TCF7L2Q9NQB0 619 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 SLC7A10Q9NS82 523 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 PARPBPQ9NWS1 579 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 CISD1Q9NZ45 108 aaKnown RBP14.33□□□□□ -0.12
COL9A3-208ENST00000469802 DCTN4Q9UJW0 460 aa14.33□□□□□ -0.12
COL9A3-208ENST00000469802 A0A096LPI6 279 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 CIB4A0PJX0 185 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 FRS3O43559 492 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 NPIPB7O75200 414 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 TGDSO95455 350 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 CXCR1P25024 350 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 SPOCK1Q08629 439 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 TNK1Q13470 666 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 CEACAM7Q14002 265 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 LRIF1Q5T3J3 769 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 TSPO2Q5TGU0 170 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 SLC2A7Q6PXP3 512 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 TMEM108Q6UXF1 575 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 SERPINA11Q86U17 422 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 FUNDC1Q8IVP5 155 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 MSRB3Q8IXL7 192 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 CADM2Q8N3J6 435 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 C17orf78Q8N4C9 275 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 TMEM99Q8N816 258 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 OR9K2Q8NGE7 335 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 C3orf49Q96BT1 292 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms