RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ITGA5P08648 1049 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 ZCCHC18P0CG32 403 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 PTAFRP25105 342 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 GABRA6Q16445 453 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 SLC9B1Q4ZJI4 515 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 PAQR6Q6TCH4 344 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 KLHL17Q6TDP4 642 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 CASP12Q6UXS9 341 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 MSANTD1Q6ZTZ1 278 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 OR52P1PQ8NH57 321 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 MUS81Q96NY9 551 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 AMBRA1Q9C0C7 1298 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 MANSC1Q9H8J5 431 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 PARPBPQ9NWS1 579 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 NKIRAS1Q9NYS0 192 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 ZIM2Q9NZV7 527 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 HIVEP2P31629 2446 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 DSPPQ9NZW4 1301 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 ZANQ9Y493 2812 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 RNF223E7ERA6 249 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 ANP32DO95626 131 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 ETFAP13804 333 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 ACVR1BP36896 505 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 ZNF83P51522 516 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 CRISP3P54108 245 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 FOXG1P55316 489 aaPredicted RBP14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 DSTNP60981 165 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 KRTAP1-1Q07627 177 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 SLC17A1Q14916 467 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 LIN52Q52LA3 116 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 AGAP6Q5VW22 663 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 ZNF836Q6ZNA1 936 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 CXXC5Q7LFL8 322 aaKnown RBP14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 VRK2Q86Y07 508 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 OR52E4Q8NGH9 312 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 ITCHQ96J02 903 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 REG4Q9BYZ8 158 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 RMND5AQ9H871 391 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 TPT1P8Q9HAU6 139 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 BARX1Q9HBU1 254 aaPredicted RBP14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 SDR39U1Q9NRG7 319 aaPredicted RBP14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 RLIMQ9NVW2 624 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 UPB1Q9UBR1 384 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 DCTN4Q9UJW0 460 aa14.57□□□□□ -0.08
CCDC28B-204ENST00000469003 LIPT2A6NK58 231 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 BCHEP06276 602 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 GPIP06744 558 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 TFPTP0C1Z6 253 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 GKN3PP0CG01 181 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 CXCR1P25024 350 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 CD40P25942 277 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 ACAA2P42765 397 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 CRATP43155 626 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 MAGOHP61326 146 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 CEACAM7Q14002 265 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 ZSWIM7Q19AV6 140 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 OTUD3Q5T2D3 398 aaPredicted RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 RNF220Q5VTB9 566 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 WBP2NLQ6ICG8 309 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 DNM1P46Q6ZS02 220 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 MAVSQ7Z434 540 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 LSRQ86X29 649 aaPredicted RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 C17orf78Q8N4C9 275 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 C1orf162Q8NEQ5 155 aaPredicted RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 SLC38A5Q8WUX1 472 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 TMEM45BQ96B21 275 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 TLCD1Q96CP7 247 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 HS6ST2Q96MM7 605 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 SF3B5Q9BWJ5 86 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 PIF1Q9H611 641 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 SLC7A10Q9NS82 523 aa14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 THUMPD1Q9NXG2 353 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 ZNF443Q9Y2A4 671 aaPredicted RBP14.56□□□□□ -0.08
CCDC28B-204ENST00000469003 CR1P17927 2039 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 A0A1W2PR80 420 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 E7EQL1 145 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 UBDO15205 165 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 NDUFS7O75251 213 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 POLR2JP52435 117 aaKnown RBP14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 COPZ1P61923 177 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 SPOCK1Q08629 439 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 LARS2Q15031 903 aaKnown RBP14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 OR7A5Q15622 319 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 NRF1Q16656 503 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 GTDC1Q4AE62 458 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 C1QTNF12Q5T7M4 302 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 TSPO2Q5TGU0 170 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 SLC22A25Q6T423 547 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 DEPDC4Q8N2C3 294 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 CADM2Q8N3J6 435 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 TMEM99Q8N816 258 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 WDR31Q8NA23 367 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 MAPK1IP1LQ8NDC0 245 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 AURKBQ96GD4 344 aaPredicted RBP14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 OR52B2Q96RD2 323 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 DHRS9Q9BPW9 319 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 TMBIM4Q9HC24 238 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 GDF2Q9UK05 429 aaPredicted RBP14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 POU2F3Q9UKI9 436 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 B3GALT5Q9Y2C3 310 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms