RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SNRPEP62304 92 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 OGDHQ02218 1023 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 EIF4EBP2Q13542 120 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ARL6IP1Q15041 203 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC9A3R2Q15599 337 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 OR4D1Q15615 310 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 KCTD19Q17RG1 926 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF718Q3SXZ3 478 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 SYPL2Q5VXT5 272 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 STUMQ69YW2 141 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 FRMPD2BQ6IN97 320 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 TPRG1Q6ZUI0 275 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 NIPA1Q7RTP0 329 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ANKRD33Q7Z3H0 272 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 DPPA2Q7Z7J5 298 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 TMPRSS11BQ86T26 416 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PLA2G4DQ86XP0 818 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PHF13Q86YI8 300 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 NAXDQ8IW45 347 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 SPAG16Q8N0X2 631 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PGAM4Q8N0Y7 254 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PUSL1Q8N0Z8 303 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 Q8N402 240 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 RIBC1Q8N443 379 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 C2orf73Q8N5S3 287 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 NOA1Q8NC60 698 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 OR52I2Q8NH67 350 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 OR14A16Q8NHC5 309 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PPP4R1Q8TF05 950 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 CA5BP1Q8WTZ4 195 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PHF10Q8WUB8 498 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 BORCS5Q969J3 196 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 FBXL8Q96CD0 374 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 RTP4Q96DX8 246 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 FBXO17Q96EF6 278 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 FEM1AQ9BSK4 669 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 COPS4Q9BT78 406 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 NDUFAF3Q9BU61 184 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ALX4Q9H161 411 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PORCNQ9H237 461 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 KAT8Q9H7Z6 458 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 Q9N2K0 584 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PHPT1Q9NRX4 125 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 MIOSQ9NXC5 875 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 VNN3Q9NY84 501 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 C1RLQ9NZP8 487 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 CCDC59Q9P031 241 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 SMPXQ9UHP9 88 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ACSL5Q9ULC5 683 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 POLDIP2Q9Y2S7 368 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 RFX7Q2KHR2 1363 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 A0A0U1RQF3 1178 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 C5orf60A6NFR6 353 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 A6NIZ1 184 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM150CB9EJG8 249 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 M0R036 132 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CHUKO15111 745 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ACOX3O15254 700 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CFLARO15519 480 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CHST1O43916 411 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 FCN3O75636 299 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 RGS11O94810 467 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CLDN9O95484 217 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 SNAP29O95721 258 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 HLA-DQA2P01906 255 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 APOC1P02654 83 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC2A1P11166 492 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 HLA-GP17693 338 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 DCKP27707 260 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 MPIP34949 423 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CSKP41240 450 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GYG1P46976 350 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CYP2J2P51589 502 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 XKP51811 444 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 NR0B1P51843 470 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GEMP55040 296 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 KCNJ2P63252 427 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 MRPS22P82650 360 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 VLDLRP98155 873 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 DHODHQ02127 395 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GUCY2DQ02846 1103 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 TNFRSF9Q07011 255 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CKAP4Q07065 602 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ILF3Q12906 894 aaKnown RBP eCLIP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GPNMBQ14956 572 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 HLFQ16534 295 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CCNJQ5T5M9 372 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 HACD4Q5VWC8 232 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 LYPLAL1Q5VWZ2 237 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 C5orf46Q6UWT4 87 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 LINGO4Q6UY18 593 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CERS6Q6ZMG9 384 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 C17orf107Q6ZR85 190 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ASB18Q6ZVZ8 466 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 TMPRSS11FQ6ZWK6 438 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ABHD13Q7L211 337 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 SETD3Q86TU7 594 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM25Q86YD3 366 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CALHM1Q8IU99 346 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 APRG1Q8IVJ8 170 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms