RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TRAPPC2BP0DI82 140 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 MLLT3P42568 568 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-217ENST00000466159 MRPS15P82914 257 aaKnown RBP8.19□□□□□ -1.1
SYNE1-217ENST00000466159 KCNAB1Q14722 419 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 ELOCQ15369 112 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 SF3A2Q15428 464 aaKnown RBP8.19□□□□□ -1.1
SYNE1-217ENST00000466159 CD226Q15762 336 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 KLHL26Q53HC5 615 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 NKAIN2Q5VXU1 208 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 ASB18Q6ZVZ8 466 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 TPRA1Q86W33 373 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 CMIPQ8IY22 773 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 MOSPD2Q8NHP6 518 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 THAP4Q8WY91 577 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 CNN2Q99439 309 aaKnown RBP8.19□□□□□ -1.1
SYNE1-217ENST00000466159 CLEC4AQ9UMR7 237 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 COPS3Q9UNS2 423 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 NOX1Q9Y5S8 564 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 ALG5Q9Y673 324 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 ALPK2Q86TB3 2170 aa8.19□□□□□ -1.1
SYNE1-217ENST00000466159 IGKV1D-42A0A075B6H8 117 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 A0A0B4J203 849 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 IGHV1OR15-9A0A0B4J2B8 117 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 A8MUA0 341 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 FAM171A2A8MVW0 826 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 C17orf105B2RV13 164 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PSMD9O00233 223 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 OGG1O15527 345 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF749O43361 778 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 OR2T7P0C7T2 308 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ALAS2P22557 587 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 CD1CP29017 333 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 TALDO1P37837 337 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GDI2P50395 445 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 CCR4P51679 360 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 AGFG1P52594 562 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PSMD4P55036 377 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 HSD17B7P56937 341 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GAS6Q14393 721 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PON3Q15166 354 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 CBLN3Q6UW01 205 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 DPY19L2P2Q6ZN68 376 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SYT13Q7L8C5 426 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SLC35F2Q8IXU6 374 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GPR135Q8IZ08 494 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SLC43A2Q8N370 569 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 MS4A15Q8N5U1 240 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 TSTD1Q8NFU3 115 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 OR5H6Q8NGV6 325 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 OR6K6Q8NGW6 343 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 OR2T27Q8NH04 317 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 TRMT10AQ8TBZ6 339 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SNX33Q8WV41 574 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF524Q96C55 264 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 KCTD12Q96CX2 325 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF285Q96NJ3 590 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SNX18Q96RF0 628 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ABHD1Q96SE0 405 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 DDOQ99489 341 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GDF15Q99988 308 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 THAP7Q9BT49 309 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF576Q9H609 170 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 NRIP3Q9NQ35 241 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PLSCR3Q9NRY6 295 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ACOXLQ9NUZ1 547 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 KLHL21Q9UJP4 597 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GNG8Q9UK08 70 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PLCL2Q9UPR0 1127 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ABCA7Q8IZY2 2146 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 TP53BP1Q12888 1972 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 BLACEA4D250 179 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 A6NL46 340 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 BLOC1S5-TXNDC5H3BN57 136 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 OR7A10O76100 309 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GLULP15104 373 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 NME1P15531 152 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SPI1P17947 270 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 RAB3BP20337 219 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 NPR2P20594 1047 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GRPRP30550 384 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PSMB10P40306 273 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PITPNBP48739 271 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 DIO1P49895 249 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 CLDN20P56880 219 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 RAB25P57735 213 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 RPS11P62280 158 aaKnown RBP eCLIP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 RACK1P63244 317 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SIRPAP78324 504 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 GGTLC2Q14390 218 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 CDK5R1Q15078 307 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 DEFB133Q30KQ1 61 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 APOOLQ6UXV4 268 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 OR4D9Q8NGE8 314 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PHOSPHO1Q8TCT1 267 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PTPMT1Q8WUK0 201 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 SMIM19Q96E16 107 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 RNF170Q96K19 258 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 PDCD1LG2Q9BQ51 273 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 KLHDC3Q9BQ90 382 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms