RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 CLUP10909 449 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 RPA2P15927 270 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SRMP19623 302 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 EDNRAP25101 427 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 FAUP35544 74 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 LTB4RQ15722 352 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 TMEM69Q5SWH9 247 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 HES5Q5TA89 166 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SHEQ5VZ18 495 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 ZNF660Q6AZW8 331 aaPredicted RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 PWWP2BQ6NUJ5 590 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 FAM111BQ6SJ93 734 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 NHLRC1Q6VVB1 395 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP48-206ENST00000464577 SLC36A1Q7Z2H8 476 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SLC35F2Q8IXU6 374 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SAMD14Q8IZD0 417 aaPredicted RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 ZNF619Q8N2I2 560 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 STPG2Q8N412 459 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 RFLNBQ8N5W9 214 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 ZNF454Q8N9F8 522 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 KCT2Q8NC54 265 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SLC16A11Q8NCK7 471 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 OR6K3Q8NGY3 331 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 OR2L8Q8NGY9 312 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SMAP2Q8WU79 429 aaPredicted RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 HAVCR1Q96D42 359 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 MRPS24Q96EL2 167 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 S100A16Q96FQ6 103 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 PAWRQ96IZ0 340 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 RSPH9Q9H1X1 276 aaPredicted RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 SLC6A20Q9NP91 592 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 NOX4Q9NPH5 578 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 PRSS16Q9NQE7 514 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 EXOSC3Q9NQT5 275 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 PRKAB1Q9Y478 270 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 TRBV2A0A0J9YWF9 115 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 PIN1P1O15428 100 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 PROS1P07225 676 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 C8AP07357 584 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 UBBP0CG47 229 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 UBCP0CG48 685 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 VSIG10L2P0DP72 767 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 NID1P14543 1247 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 HOXB3P14651 431 aaPredicted RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 LAG3P18627 525 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 PTNP21246 168 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 RAB28P51157 221 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 METAP1P53582 386 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SCAND1P57086 179 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 CLDN2P57739 230 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 GMFBP60983 142 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 ST8SIA6P61647 398 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 RPS27AP62979 156 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 UBA52P62987 128 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 ZMYND11Q15326 602 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 RBMS2Q15434 407 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 ZNF77Q15935 545 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 EXOSC6Q5RKV6 272 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 ZNF613Q6PF04 617 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 FCRLAQ7L513 359 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 DGLUCYQ7Z3D6 616 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 PM20D2Q8IYS1 436 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 OR2L13Q8N349 312 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 LRRC25Q8N386 305 aaPredicted RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 MFSD9Q8NBP5 474 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 OR7G2Q8NG99 324 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 OR14A16Q8NHC5 309 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 C1orf216Q8TAB5 229 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SYNPRQ8TBG9 265 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 ZDHHC1Q8WTX9 485 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 MIB2Q96AX9 1013 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 OTUB2Q96DC9 234 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 C10orf90Q96M02 699 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SDF2Q99470 211 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 SLC38A3Q99624 504 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 ARL6Q9H0F7 186 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 NCDNQ9UBB6 729 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 KLK11Q9UBX7 282 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 CYB5R1Q9UHQ9 305 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 GPR160Q9UJ42 338 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 FBXL2Q9UKC9 423 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 V9GY05 133 aa6.72□□□□□ -1.33
USP48-206ENST00000464577 TCF20Q9UGU0 1960 aaKnown RBP6.72□□□□□ -1.33
USP48-206ENST00000464577 TET1Q8NFU7 2136 aa6.71□□□□□ -1.33
USP48-206ENST00000464577 TRAV27A0A087WT01 109 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 FXYD6-FXYD2A0A087WZ82 144 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 CENPVL1A0A0U1RR11 272 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 POM121CA8CG34 1229 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 PRAMEF2O60811 474 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 CTNSO60931 367 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 FGF19O95750 216 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 CISD3P0C7P0 127 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 LAMP2P13473 410 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 ZNF35P13682 527 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 ADRB3P13945 408 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 GLULP15104 373 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 MPGP29372 298 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 DCTDP32321 178 aa6.71□□□□□ -1.34
USP48-206ENST00000464577 CCR2P41597 374 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms