RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 VDAC3Q9Y277 283 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 DNAJC15Q9Y5T4 150 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 PTGDR2Q9Y5Y4 395 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 MPDZO75970 2070 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 A0A1W2PQD3 144 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 SMIM23A6NLE4 172 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 DEFB108AA8MXU0 73 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 TMEM114B3SHH9 223 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 ARHGEF9O43307 516 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 AKAP10O43572 662 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 SOX30O94993 753 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 KCNK2O95069 426 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 ALOX5P09917 674 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 LINC00032P0C843 101 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 ACP2P11117 423 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 HPGDP15428 266 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 IL11P20809 199 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 CCKARP32238 428 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 RPL3P39023 403 aaKnown RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 PRIM2P49643 509 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 NKX6-1P78426 367 aaPredicted RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 SRSF4Q08170 494 aaKnown RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 UGT3A2Q3SY77 523 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 GALNTL6Q49A17 601 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 CPTPQ5TA50 214 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 MFSD12Q6NUT3 480 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 SZRD1Q7Z422 152 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 EXOC3L1Q86VI1 746 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 LRRC75A-AS1Q8N1F1 130 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 GTPBP8Q8N3Z3 284 aaPredicted RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 RIBC1Q8N443 379 aaPredicted RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 NATD1Q8N6N6 113 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 OR6K3Q8NGY3 331 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 TWIST2Q8WVJ9 160 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 GMPPAQ96IJ6 420 aaPredicted RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 APOPT1Q96IL0 206 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 ADGRG7Q96K78 797 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 C18orf12Q96KH6 178 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 STACQ99469 402 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 PRRG4Q9BZD6 226 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 EML4Q9HC35 981 aaKnown RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 FANCFQ9NPI8 374 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 PLSCR4Q9NRQ2 329 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 DUSP22Q9NRW4 184 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 GLRX2Q9NS18 164 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 GIN1Q9NXP7 522 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 C6orf203Q9P0P8 240 aaPredicted RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 BAIAP2L1Q9UHR4 511 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 MCTS1Q9ULC4 181 aaKnown RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 FIS1Q9Y3D6 152 aa6.47□□□□□ -1.37
USP54-208ENST00000461520 FN1P02751 2386 aaKnown RBP6.47□□□□□ -1.37
USP54-208ENST00000461520 UQCRHLA0A096LP55 91 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 A0A1W2PRB8 838 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 CGB1A6NKQ9 187 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 SCAMP2O15127 329 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 ADAMDEC1O15204 470 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 GMFGO60234 142 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 SMPD2O60906 423 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 SS18L1O75177 396 aaPredicted RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 LYPLA1O75608 230 aaPredicted RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 AQP8O94778 261 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 PLGP00747 810 aaPredicted RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 HMGN2P05204 90 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 CHRNGP07510 517 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 BCKDHAP12694 445 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 ME2P23368 584 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 PSMA4P25789 261 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 ALDH3A1P30838 453 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 SERPINB5P36952 375 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 HPCAL1P37235 193 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 EIF1P41567 113 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 ZNF41P51814 821 aaPredicted RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 CTBP2P56545 445 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 ACKR1Q16570 336 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 DUSP5Q16690 384 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 CTU2Q2VPK5 515 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 PLPPR5Q32ZL2 321 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 ARL13AQ5H913 290 aaPredicted RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 PDSS1Q5T2R2 415 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 PRSS57Q6UWY2 283 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 ZNF550Q7Z398 422 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 MTERF4Q7Z6M4 381 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 GALNT10Q86SR1 603 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 DDIASQ8IXT1 998 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 COX18Q8N8Q8 333 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 BANPQ8N9N5 519 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 OR10D3Q8NH80 312 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 CLHC1Q8NHS4 586 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 FAM120BQ96EK7 910 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 PIK3IP1Q96FE7 263 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 MARK4Q96L34 752 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 PPP3R2Q96LZ3 170 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 RNF145Q96MT1 663 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 AMBRA1Q9C0C7 1298 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 HOXD1Q9GZZ0 328 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 PIGUQ9H490 435 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 SIRT3Q9NTG7 399 aaPredicted RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 ZCCHC3Q9NUD5 404 aaKnown RBP6.46□□□□□ -1.38
USP54-208ENST00000461520 MED17Q9NVC6 651 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 ATAD3AQ9NVI7 634 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms