RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 APLNRP35414 380 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 RBPJQ06330 500 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CAMK2DQ13557 499 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 PLK5Q496M5 336 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 GXYLT1Q4G148 440 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 NKAPLQ5M9Q1 402 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 PGBD2Q6P3X8 592 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF704Q6ZNC4 412 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 AAED1Q7RTV5 226 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 OR4D9Q8NGE8 314 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 HAVCR2Q8TDQ0 301 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 GATA6Q92908 595 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 HRASLS5Q96KN8 279 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 FRMD6Q96NE9 622 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 YARS2Q9Y2Z4 477 aaKnown RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 WRBO00258 174 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 NRG2O14511 850 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 SLC43A1O75387 559 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 OR2J2O76002 312 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ARPC4P59998 168 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 FAM69AQ5T7M9 428 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 C9orf135Q5VTT2 229 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 C1orf140Q5VVS0 124 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF425Q6IV72 752 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 RNF165Q6ZSG1 346 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CAPSLQ8WWF8 208 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CLCC1Q96S66 551 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 URM1Q9BTM9 101 aaKnown RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ACER3Q9NUN7 267 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 NTNG1Q9Y2I2 539 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 GRIP1Q9Y3R0 1128 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 SESN1Q9Y6P5 492 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 SEC16AO15027 2179 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 NUP214P35658 2090 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 AGAP5A6NIR3 686 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CLDN24A6NM45 220 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 PATE3B3GLJ2 98 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 OR7A10O76100 309 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CLUP10909 449 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 EVI2BP34910 448 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 PHC1P78364 1004 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 EMX1Q04741 257 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 NIPAL3Q6P499 406 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 RIMKLAQ8IXN7 391 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 PFN4Q8NHR9 129 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 NMNAT3Q96T66 252 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 GINS4Q9BRT9 223 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 SERTM1A2A2V5 107 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 LRRN3E7EW58 273 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 EIF1BO60739 113 aaKnown RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 SOD1P00441 154 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CD14P08571 375 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 UCHL1P09936 223 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ENPP1P22413 925 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 SLC1A3P43003 542 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 STARD6P59095 220 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 FOXK2Q01167 660 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 EIF3IQ13347 325 aaKnown RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 MLC1Q15049 377 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 AGERQ15109 404 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 TMEM53Q6P2H8 277 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 B3GLCTQ6Y288 498 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CARFQ8N187 725 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 DTX3Q8N9I9 347 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 OR5M1Q8NGP8 315 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 OR5J2Q8NH18 312 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 GPR148Q8TDV2 347 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ARSGQ96EG1 525 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CST11Q9H112 138 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF385DQ9H6B1 395 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 PARPBPQ9NWS1 579 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 BIDP55957 195 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 RNF4P78317 190 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF45Q02386 682 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 CRMP1Q14194 572 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 MELKQ14680 651 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 C4orf46Q504U0 113 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 TMEM69Q5SWH9 247 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 HBMQ6B0K9 141 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 FAM199XQ6PEV8 388 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-213ENST00000448038 DPY19L2P2Q6ZN68 376 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 ALG12Q9BV10 488 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 INPP5EQ9NRR6 644 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 PCOLCE2Q9UKZ9 415 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 SATB2Q9UPW6 733 aa6.82□□□□□ -1.32
SYNE1-213ENST00000448038 FRG2CA6NGY1 282 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 FAM166BA8MTA8 275 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 HSPA12AO43301 675 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ATP1B1P05026 303 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 LTBRP36941 435 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 GABREP78334 506 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SQSTM1Q13501 440 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 KDM4DQ6B0I6 523 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PIWIL3Q7Z3Z3 882 aaKnown RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 DNAJC22Q8N4W6 341 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 OR8S1Q8NH09 359 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PHOX2BQ99453 314 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SLC6A13Q9NSD5 602 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 UBAP1Q9NZ09 502 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 LRFN1Q9P244 771 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms