RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ZNF16P17020 682 aaPredicted RBP12.73□□□□□ -0.37
SDC1-204ENST00000429035 FKBP2P26885 142 aaKnown RBP12.73□□□□□ -0.37
SDC1-204ENST00000429035 CLK1P49759 484 aaKnown RBP12.73□□□□□ -0.37
SDC1-204ENST00000429035 SLC25A3Q00325 362 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 STX3Q13277 289 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 TMEM249Q2WGJ8 235 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 COX20Q5RI15 118 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 GPAT4Q86UL3 456 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 HIPK1Q86Z02 1210 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 KIRREL3Q8IZU9 778 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 CADM2Q8N3J6 435 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 ANKRD42Q8N9B4 389 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 FAM168AQ92567 244 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 TEX37Q96LM6 180 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 CCDC115Q96NT0 180 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 TRNT1Q96Q11 434 aaKnown RBP12.73□□□□□ -0.37
SDC1-204ENST00000429035 OR52E6Q96RD3 313 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 SLC17A5Q9NRA2 495 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 BTNL2Q9UIR0 455 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 ARFGEF3Q5TH69 2177 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 CFAP73A6NFT4 308 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 AGAP5A6NIR3 686 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 TM9SF1O15321 606 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 ZNF208O43345 1280 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 LY6HO94772 140 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 AKR7A3O95154 331 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 GKN3PP0CG01 181 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 CXCR1P25024 350 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 DSCR9P59020 149 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 TGFBR3Q03167 851 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 EPS8Q12929 822 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 CEACAM7Q14002 265 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 CARTPTQ16568 116 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 NXNQ6DKJ4 435 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 ZNF544Q6NX49 715 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 LRRC74BQ6ZQY2 392 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 AAED1Q7RTV5 226 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 CMIPQ8IY22 773 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 PEX5LQ8IYB4 626 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 C17orf78Q8N4C9 275 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 WDR31Q8NA23 367 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 PMM1Q92871 262 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 FBXO17Q96EF6 278 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 KCNS3Q9BQ31 491 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 TAPBPLQ9BX59 468 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 MEAF6Q9HAF1 191 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 CACYBPQ9HB71 228 aaKnown RBP12.72□□□□□ -0.37
SDC1-204ENST00000429035 AIG1Q9NVV5 245 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 PARPBPQ9NWS1 579 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 ADPRHL2Q9NX46 363 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 P2RX2Q9UBL9 471 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 DCTN4Q9UJW0 460 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 MOKQ9UQ07 419 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 TRAPPC4Q9Y296 219 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.72□□□□□ -0.37
SDC1-204ENST00000429035 COL6A5A8TX70 2615 aa12.72□□□□□ -0.37
SDC1-204ENST00000429035 KLF11O14901 512 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 SNUPNO95149 360 aaKnown RBP12.71□□□□□ -0.37
SDC1-204ENST00000429035 ANP32DO95626 131 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 WNT11O96014 354 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 BCHEP06276 602 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 PGRP06401 933 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 GPIP06744 558 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 DBIP07108 87 aaKnown RBP12.71□□□□□ -0.37
SDC1-204ENST00000429035 KITP10721 976 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 BMP4P12644 408 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 SLC25A16P16260 332 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 MPGP29372 298 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 IL12AP29459 219 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 SLC1A3P43003 542 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 CHRNB3Q05901 458 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 BST1Q10588 318 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 BNIP2Q12982 314 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 SLC17A1Q14916 467 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 LIN52Q52LA3 116 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 HIKESHIQ53FT3 197 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 CEP85LQ5SZL2 805 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 PAQR6Q6TCH4 344 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 ZNF836Q6ZNA1 936 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 VRK2Q86Y07 508 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 PHC2Q8IXK0 858 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 TMEM99Q8N816 258 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 C1orf162Q8NEQ5 155 aaPredicted RBP12.71□□□□□ -0.37
SDC1-204ENST00000429035 OR10H5Q8NGA6 315 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 OR9K2Q8NGE7 335 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 MGARPQ8TDB4 240 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 MUS81Q96NY9 551 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 ZNF385AQ96PM9 386 aaKnown RBP12.71□□□□□ -0.37
SDC1-204ENST00000429035 ALKBH3Q96Q83 286 aaPredicted RBP12.71□□□□□ -0.37
SDC1-204ENST00000429035 TNFRSF13CQ96RJ3 184 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 KCNK17Q96T54 332 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 TMEM109Q9BVC6 243 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 RLIMQ9NVW2 624 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 PMF1-BGLAPU3KQ54 211 aa12.71□□□□□ -0.37
SDC1-204ENST00000429035 MALRD1Q5VYJ5 2156 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 CUBNO60494 3623 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 A0A096LNT2 108 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 H7C417 338 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 PDLIM1O00151 329 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 SDHDO14521 159 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms