RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RFXANKO14593 260 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 LGI1O95970 557 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ACPPP15309 386 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 DNAJA1P31689 397 aaKnown RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 HACD4Q5VWC8 232 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 DMRTA1Q5VZB9 504 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ABLIM2Q6H8Q1 611 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PUSL1Q8N0Z8 303 aaKnown RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 TMEM151AQ8N4L1 468 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 OR2L3Q8NG85 312 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 OR11H4Q8NGC9 324 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 EXTL1Q92935 676 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 TMEM203Q969S6 136 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 HHATLQ9HCP6 504 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 CALML5Q9NZT1 146 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ACSL6Q9UKU0 697 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 SEC14L5O43304 696 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 CRYABP02511 175 aaKnown RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 RPLP1P05386 114 aaKnown RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 EFNA1P20827 205 aaPredicted RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 CPT2P23786 658 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PCGF2P35227 344 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PXNP49023 591 aaPredicted RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 TLE4Q04727 773 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 DHRS7BQ6IAN0 325 aaPredicted RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 KIAA1211LQ6NV74 962 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 C1orf210Q8IVY1 113 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 RELL2Q8NC24 303 aaPredicted RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 OR6X1Q8NH79 312 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 RHNO1Q9BSD3 238 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ALG8Q9BVK2 526 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 HEXA-AS1Q9H8Q6 139 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 TRPC4Q9UBN4 977 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ZNF282Q9UDV7 671 aaPredicted RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 STARD10Q9Y365 291 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 A0A1W2PPQ1 181 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PHOX2AO14813 284 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 RAP2BP61225 183 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PRR5P85299 388 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 VLDLRP98155 873 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 C1orf61Q13536 156 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ENPP2Q13822 863 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 RBM39Q14498 530 aaKnown RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 ODF4Q2M2E3 257 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 C22orf42Q6IC83 251 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 QSOX2Q6ZRP7 698 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 LINGO2Q7L985 606 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 DTWD2Q8NBA8 298 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 OR13H1Q8NG92 308 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 OIT3Q8WWZ8 545 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 SLC6A18Q96N87 628 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PTCHD1Q96NR3 888 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PANX1Q96RD7 426 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 LUZP4Q9P127 313 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 RNF24Q9Y225 148 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 TSC2P49815 1807 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 NDUFS4O43181 175 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 RNF13O43567 381 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 NSA2O95478 260 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 ADAP00813 363 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 PTHP01270 115 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 GABRB1P18505 474 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 TBXA2RP21731 343 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 MANFP55145 182 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 GPR176Q14439 515 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 LAPTM4BQ86VI4 370 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 WDR5BQ86VZ2 330 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 ZFAND4Q86XD8 727 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 ARRDC1Q8N5I2 433 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 OR56A3Q8NH54 315 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 OR10J5Q8NHC4 309 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 RAB24Q969Q5 203 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 TMEM185BQ9H7F4 350 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 FBRSL1Q9HCM7 1045 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 C5orf52A6NGY3 159 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 M0QZK8 103 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 SLC28A2O43868 658 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 CDC40O60508 579 aaKnown RBP eCLIP9.09□□□□□ -0.95
USP54-205ENST00000424265 ICOSLGO75144 302 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 SLC16A8O95907 504 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 LINC00614P0C842 121 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 MECP2P51608 486 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 IKZF1Q13422 519 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 Q6ZS52 159 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 PELI3Q8N2H9 469 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 IFI44Q8TCB0 444 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 MOAP1Q96BY2 351 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 AKTIPQ9H8T0 292 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 FAM120CQ9NX05 1096 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 C19orf25Q9UFG5 118 aaPredicted RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 CDH10Q9Y6N8 788 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 IL1AP01583 271 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 FABP3P05413 133 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 FOXK2Q01167 660 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 ADAM5Q6NVV9 412 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 FIGLAQ6QHK4 219 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 RANBP3LQ86VV4 465 aaPredicted RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 FAM129CQ86XR2 697 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 VRK3Q8IV63 474 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 GGHQ92820 318 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms