RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 BORAQ6PGQ7 559 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 THAP5Q7Z6K1 395 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 GTPBP8Q8N3Z3 284 aaPredicted RBP15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 ZNF524Q96C55 264 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 NTNG2Q96CW9 530 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 HRASLS5Q96KN8 279 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 MUS81Q96NY9 551 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 PITX2Q99697 317 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 TAPBPLQ9BX59 468 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 TSSK6Q9BXA6 273 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 EGLN3Q9H6Z9 239 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 PKD1L2Q7Z442 2459 aa15.5■□□□□ 0.07
CCDC28B-202ENST00000421922 ANKRD11Q6UB99 2663 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 TRAV27A0A087WT01 109 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 TRAV17A0A0B4J275 112 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 LRRC3CA6NJW4 275 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 ZAR1LA6NP61 321 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 H3BML4 177 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 CDC42EP2O14613 210 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 MT-ATP6P00846 226 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 GGT2P36268 569 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 TNFSF10P50591 281 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 MFSD13AQ14CX5 517 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 ZNF74Q16587 644 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 GLYR1Q49A26 553 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 ZBED5Q49AG3 693 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 FAM69AQ5T7M9 428 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 SMARCD3Q6STE5 483 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 IGFL2Q6UWQ7 119 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 Q6ZPB1 254 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 MAMDC2Q7Z304 686 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 NANOGNBQ7Z5D8 188 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 KIF18BQ86Y91 864 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 SLC43A2Q8N370 569 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 OR5M1Q8NGP8 315 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 OR51A7Q8NH64 312 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 SLC25A36Q96CQ1 311 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 KTI12Q96EK9 354 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 SMAD5Q99717 465 aaKnown RBP15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 ASPNQ9BXN1 380 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 ADNPQ9H2P0 1102 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 OR52D1Q9H346 318 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 FKRPQ9H9S5 495 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 PNPLA3Q9NST1 481 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 NDRG4Q9ULP0 352 aaKnown RBP15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 SSUH2Q9Y2M2 353 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 RAXQ9Y2V3 346 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 HSPE1-MOB4S4R3N1 261 aa15.49■□□□□ 0.07
CCDC28B-202ENST00000421922 URB1O60287 2271 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 PINLYPA6NC86 204 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 GJE1A6NN92 205 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 K7ENP7 123 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 NDUFB2O95178 105 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 IGFBP1P08833 259 aaPredicted RBP15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 PEPDP12955 493 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 EPHA2P29317 976 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SLC6A6P31641 620 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 IDUAP35475 653 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 EGR4Q05215 589 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 GINS1Q14691 196 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 ANKDD1AQ495B1 522 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SYT14P1Q58G82 188 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 CLEC12AQ5QGZ9 265 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 INO80CQ6PI98 192 aaPredicted RBP15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 USP51Q70EK9 711 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SLC46A3Q7Z3Q1 461 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SLC22A16Q86VW1 577 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 OR2T33Q8NG76 320 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 POC1BQ8TC44 478 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SCMH1Q96GD3 660 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 PLEKHA8Q96JA3 519 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SAMD8Q96LT4 415 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SFXN2Q96NB2 322 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 SLC38A2Q96QD8 506 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 NR1H4Q96RI1 486 aaPredicted RBP15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 TTTY12Q9BZ98 90 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 OR11A1Q9GZK7 315 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 TMEM185BQ9H7F4 350 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 IL20Q9NYY1 176 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 ZNF229Q9UJW7 825 aa15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 PCDHGA9Q9Y5G4 932 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-202ENST00000421922 ZC3H12DA2A288 527 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 OR2M5A3KFT3 312 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 FAM166BA8MTA8 275 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 LRRN3E7EW58 273 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 OR6A2O95222 327 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 RPSAP08865 295 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 RPL4P36578 427 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 SLX4IPQ5VYV7 408 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 TMEM236Q5W0B7 351 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 YRDCQ86U90 279 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 IQCF1Q8N6M8 205 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 SMPDL3BQ92485 455 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 TAAR8Q969N4 342 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 DNAJA3Q96EY1 480 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 NPAS1Q99742 590 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 IFT27Q9BW83 186 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 POTEKPQ9BYX7 375 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 PLA2G12AQ9BZM1 189 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 OR2B2Q9GZK3 357 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms