RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 BRD7Q9NPI1 651 aa9.02□□□□□ -0.97
CD44-206ENST00000415148 WSB2Q9NYS7 404 aaPredicted RBP9.02□□□□□ -0.97
CD44-206ENST00000415148 PILRAQ9UKJ1 303 aa9.02□□□□□ -0.97
CD44-206ENST00000415148 PPIEQ9UNP9 301 aaKnown RBP9.02□□□□□ -0.97
CD44-206ENST00000415148 A0A087WV48 116 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PRSS38A1L453 326 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 ZNF879B4DU55 563 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PDCD5O14737 125 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 SULT1B1O43704 296 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 GPRIN2O60269 458 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 RGS11O94810 467 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PPP1R3DO95685 299 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 IFNA7P01567 189 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PTHLHP12272 177 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 DNASE1P24855 282 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 MAGEB1P43366 347 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 GDI2P50395 445 aaKnown RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 EPHA4P54764 986 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 FHL1Q13642 323 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PRICKLE4Q2TBC4 344 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PSRC1Q6PGN9 363 aaPredicted RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 CACUL1Q86Y37 369 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 OR51A7Q8NH64 312 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 NXPE2Q96DL1 559 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 RBCK1Q9BYM8 510 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 CHIAQ9BZP6 476 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 B3GNT4Q9C0J1 378 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 MS4A7Q9GZW8 240 aaPredicted RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 METTL17Q9H7H0 456 aaPredicted RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 ADAP2Q9NPF8 381 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 NRIP3Q9NQ35 241 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 TBC1D29Q9UFV1 150 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 NUP50Q9UKX7 468 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PCDHGA9Q9Y5G4 932 aaKnown RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 TRAV27A0A087WT01 109 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 NPIPA5A0A0B4J1W7 369 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 NPIPA7E9PJI5 369 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 DNAJB6O75190 326 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 NKX2-2O95096 273 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 TGM6O95932 706 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 NPIPA8P0DM63 369 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 LGALS3BPQ08380 585 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 MGAT2Q10469 447 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 SLC35D3Q5M8T2 416 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 FAAP20Q6NZ36 180 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 FIGLAQ6QHK4 219 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 OR2T4Q8NH00 348 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PHOSPHO2Q8TCD6 241 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 CTHRC1Q96CG8 243 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PELI1Q96FA3 418 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 CNN2Q99439 309 aaKnown RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 CLEC4MQ9H2X3 399 aaPredicted RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 MCCC2Q9HCC0 563 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 FBXO34Q9NWN3 711 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 CXXC1Q9P0U4 656 aaPredicted RBP9.01□□□□□ -0.97
CD44-206ENST00000415148 CHRNA9Q9UGM1 479 aa9.01□□□□□ -0.97
CD44-206ENST00000415148 PEX14O75381 377 aa9□□□□□ -0.97
CD44-206ENST00000415148 SPTBP11277 2137 aa9□□□□□ -0.97
CD44-206ENST00000415148 FCARP24071 287 aa9□□□□□ -0.97
CD44-206ENST00000415148 GABRA3P34903 492 aa9□□□□□ -0.97
CD44-206ENST00000415148 WASP42768 502 aa9□□□□□ -0.97
CD44-206ENST00000415148 MAP2K6P52564 334 aa9□□□□□ -0.97
CD44-206ENST00000415148 KIAA1024LP59773 190 aa9□□□□□ -0.97
CD44-206ENST00000415148 AP3S2P59780 193 aa9□□□□□ -0.97
CD44-206ENST00000415148 RPS11P62280 158 aaKnown RBP eCLIP9□□□□□ -0.97
CD44-206ENST00000415148 CLLU1Q5K131 121 aa9□□□□□ -0.97
CD44-206ENST00000415148 ELFN2Q5R3F8 820 aa9□□□□□ -0.97
CD44-206ENST00000415148 FCRL6Q6DN72 434 aa9□□□□□ -0.97
CD44-206ENST00000415148 UBE2Q1Q7Z7E8 422 aa9□□□□□ -0.97
CD44-206ENST00000415148 SLC51BQ86UW2 128 aa9□□□□□ -0.97
CD44-206ENST00000415148 SLC35F2Q8IXU6 374 aa9□□□□□ -0.97
CD44-206ENST00000415148 C12orf76Q8N812 135 aaPredicted RBP9□□□□□ -0.97
CD44-206ENST00000415148 FAM71CQ8NEG0 241 aa9□□□□□ -0.97
CD44-206ENST00000415148 OR2T35Q8NGX2 323 aa9□□□□□ -0.97
CD44-206ENST00000415148 OR14A16Q8NHC5 309 aa9□□□□□ -0.97
CD44-206ENST00000415148 OR14C36Q8NHC7 312 aa9□□□□□ -0.97
CD44-206ENST00000415148 LINC00052Q96N35 136 aa9□□□□□ -0.97
CD44-206ENST00000415148 ERMAPQ96PL5 475 aaPredicted RBP9□□□□□ -0.97
CD44-206ENST00000415148 DDOQ99489 341 aa9□□□□□ -0.97
CD44-206ENST00000415148 NANSQ9NR45 359 aa9□□□□□ -0.97
CD44-206ENST00000415148 CA10Q9NS85 328 aa9□□□□□ -0.97
CD44-206ENST00000415148 TMEM74BQ9NUR3 256 aa9□□□□□ -0.97
CD44-206ENST00000415148 FLRT3Q9NZU0 649 aa9□□□□□ -0.97
CD44-206ENST00000415148 TRBV2A0A0J9YWF9 115 aa9□□□□□ -0.97
CD44-206ENST00000415148 A0A1B0GWA3 101 aa9□□□□□ -0.97
CD44-206ENST00000415148 GXYLT2A0PJZ3 443 aa9□□□□□ -0.97
CD44-206ENST00000415148 TUBAL3A6NHL2 446 aa9□□□□□ -0.97
CD44-206ENST00000415148 LRRC72A6NJI9 287 aa9□□□□□ -0.97
CD44-206ENST00000415148 CYR61O00622 381 aa9□□□□□ -0.97
CD44-206ENST00000415148 KHNYNO15037 678 aaKnown RBP9□□□□□ -0.97
CD44-206ENST00000415148 P2RX6O15547 441 aa9□□□□□ -0.97
CD44-206ENST00000415148 SSNA1O43805 119 aa9□□□□□ -0.97
CD44-206ENST00000415148 CTSVO60911 334 aa9□□□□□ -0.97
CD44-206ENST00000415148 TPPPO94811 219 aa9□□□□□ -0.97
CD44-206ENST00000415148 NDUFB2O95178 105 aa9□□□□□ -0.97
CD44-206ENST00000415148 C4BPBP20851 252 aa9□□□□□ -0.97
CD44-206ENST00000415148 ACAA2P42765 397 aaKnown RBP9□□□□□ -0.97
CD44-206ENST00000415148 MRPS10P82664 201 aaKnown RBP9□□□□□ -0.97
CD44-206ENST00000415148 PLAURQ03405 335 aa9□□□□□ -0.97
CD44-206ENST00000415148 PON3Q15166 354 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms