RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ADH4P08319 380 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ADRA2CP18825 462 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 HTR2CP28335 458 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CD68P34810 354 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ARSDP51689 593 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 RRADP55042 308 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 DYRK1AQ13627 763 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 NR0B2Q15466 257 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 EEF1A1P5Q5VTE0 462 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 C1orf94Q6P1W5 598 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ADGRE4PQ86SQ3 457 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 DND1Q8IYX4 353 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TECTBQ96PL2 329 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GMLQ99445 158 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 KLF16Q9BXK1 252 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 NCDNQ9UBB6 729 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM269A0A1B0GVZ9 245 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 NPIPB15A6NHN6 443 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SNRPGP15A8MWD9 76 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FAM72CH0Y354 149 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 H3BNC9 293 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ATP1B1P05026 303 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SBK2P0C263 348 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 RAB4AP20338 218 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GALP22466 123 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CST5P28325 142 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SLC1A3P43003 542 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 KCNJ10P78508 379 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 REEP5Q00765 189 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PRDX1Q06830 199 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SPCS2Q15005 226 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SLC36A2Q495M3 483 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CYP27C1Q4G0S4 372 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SOHLH1Q5JUK2 328 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 EXOSC6Q5RKV6 272 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FAM72AQ5TYM5 149 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FAM72DQ6L9T8 149 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 B3GNT9Q6UX72 402 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ADAMTSL4Q6UY14 1074 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM200AQ86VY9 491 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FAM72BQ86X60 149 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 KIAA1958Q8N8K9 716 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 STT3BQ8TCJ2 826 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FRZBQ92765 325 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 MED18Q9BUE0 208 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM59Q9BXS4 323 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ACPTQ9BZG2 426 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SLC6A17Q9H1V8 727 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PLEKHA2Q9HB19 425 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GIMAP2Q9UG22 337 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 YTHDF2Q9Y5A9 579 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 LOC100289279A0A1B0GTE1 492 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 MEN1O00255 615 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 RFXAPO00287 272 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SOX15O60248 233 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 JTBO76095 146 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PAPLNO95428 1278 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 HMGN2P05204 90 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 THBS1P07996 1170 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 HLA-DOBP13765 273 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ADRA1AP35348 466 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 BMPR1AP36894 532 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PSMB3P49720 205 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CLDN6P56747 220 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SCAND1P57086 179 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TNFRSF17Q02223 184 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 LAPTM4AQ15012 233 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 OR1Q1Q15612 314 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ODF4Q2M2E3 257 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TRAPPC6BQ86SZ2 158 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 BPHLQ86WA6 291 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SYS1Q8N2H4 156 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ZFP90Q8TF47 636 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FRS2Q8WU20 508 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 OR7D2Q96RA2 312 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ARHGAP9Q9BRR9 750 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 OPA3Q9H6K4 179 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 DDX31Q9H8H2 851 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ELOVL3Q9HB03 270 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 LYRM4Q9HD34 91 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FBXO8Q9NRD0 319 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PLEK2Q9NYT0 353 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 REV1Q9UBZ9 1251 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PLAGL1Q9UM63 463 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CFAP20Q9Y6A4 193 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 A0A1W2PP55 124 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 A8MV72 311 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 C17orf105B2RV13 164 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF264O43296 627 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GBAP04062 536 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TYRP1P17643 537 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SPI1P17947 270 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GPX2P18283 190 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 M6PRP20645 277 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 IL2RGP31785 369 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GGT5P36269 586 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 HTR6P50406 440 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 HCCSP53701 268 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 MLLT10P55197 1068 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 RPS23P62266 143 aaKnown RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms