RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 FAM26EQ8N5C1 309 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ADAD1Q96M93 576 aaKnown RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 CNTNAP3BQ96NU0 1288 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 MICU1Q9BPX6 476 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 UBQLN3Q9H347 655 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 MKI67P46013 3256 aaKnown RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 A0A1B0GVI7 797 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 IFNA10P01566 189 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 CXCL10P02778 98 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 IFNA4P05014 189 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 NME1P15531 152 aaKnown RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 NQO2P16083 231 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 EIF2S3P41091 472 aaKnown RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 AQP2P41181 271 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ETV6P41212 452 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 MVDP53602 400 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 SHC2P98077 582 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 MESP2Q0VG99 397 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ARTNQ5T4W7 220 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 KIAA1211LQ6NV74 962 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 JAZF1Q86VZ6 243 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ACBD4Q8NC06 268 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 CHST4Q8NCG5 386 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 OR52E1Q8NGJ3 308 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 OR10Z1Q8NGY1 313 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 GIMAP1Q8WWP7 306 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 UPRTQ96BW1 309 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 RAD9AQ99638 391 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 EIF5A2Q9GZV4 153 aaKnown RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ZBP1Q9H171 429 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 HRH4Q9H3N8 390 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 C6orf106Q9H6K1 298 aaPredicted RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM231Q9H6L2 316 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 PLEKHB1Q9UF11 243 aaPredicted RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 PDCD11Q14690 1871 aaKnown RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 A0A1W2PQU0 124 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ELOA3DA6NLF2 546 aaPredicted RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 KRT33AO76009 404 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 HIST1H2ABP04908 130 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 DGCR2P98153 550 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ELOA3BQ3SY89 546 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 LCTLQ6UWM7 567 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 HIST3H2AQ7L7L0 130 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF627Q7L945 461 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 GALNTL5Q7Z4T8 443 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 SPRED2Q7Z698 418 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ELOA3Q8NG57 546 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 MFSD8Q8NHS3 518 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 HIST1H2ACQ93077 130 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 SOHLH2Q9NX45 425 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 TBX21Q9UL17 535 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 LRRC37A2A6NM11 1700 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 NYNRINQ9P2P1 1898 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 ARL6IP5O75915 188 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CTSEP14091 401 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 ARL4DP49703 201 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SKP1P63208 163 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CDK3Q00526 305 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 PRDX1Q06830 199 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 C1orf61Q13536 156 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 AGERQ15109 404 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 PDGFRLQ15198 375 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 C14orf28Q4W4Y0 310 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 TCEAL6Q6IPX3 200 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 LRRC25Q8N386 305 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 MS4A15Q8N5U1 240 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM239Q8WW34 195 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SMPDL3BQ92485 455 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 TOX2Q96NM4 488 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SDHCQ99643 169 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 FBXL4Q9UKA2 621 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SCML1Q9UN30 329 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 IER3IP1Q9Y5U9 82 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CDH10Q9Y6N8 788 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 COLEC10Q9Y6Z7 277 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 A0A0A6YYJ9 748 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 URADA6NGE7 173 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 C11orf98E9PRG8 122 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SULT1C2O00338 296 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 RNF13O43567 381 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 PRAMEF2O60811 474 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SNAPINO95295 136 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 LIMS3P0CW19 117 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 LIMS4P0CW20 117 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 DRD2P14416 443 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 PRPH2P23942 346 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 RPS27P42677 84 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 EVX1P49640 407 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 UBE2MP61081 183 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 EEF1A1P68104 462 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CSNK1G2P78368 415 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 E2F1Q01094 437 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 EEF1A2Q05639 463 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 GPM6BQ13491 265 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM69Q5SWH9 247 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 EEF1A1P5Q5VTE0 462 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SLC6A19Q695T7 634 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 VASNQ6EMK4 673 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 ANKRD33Q7Z3H0 272 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 C12orf40Q86WS4 652 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms