RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 OR5K3A6NET4 321 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 PBX2P40425 430 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 RRAS2P62070 204 aaPredicted RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 EEF1A2Q05639 463 aaKnown RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.12■□□□□ 0.331e-9■■■□□ 17.2
USP48-204ENST00000400301 MANEAQ5SRI9 462 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 VASH1Q7L8A9 365 aaPredicted RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 SIMC1Q8NDZ2 872 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 BAHD1Q8TBE0 780 aaPredicted RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 SYNPRQ8TBG9 265 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 TCTN2Q96GX1 697 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 PLA2G2FQ9BZM2 168 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 ISG20L2Q9H9L3 353 aaKnown RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 POLE3Q9NRF9 147 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 RCE1Q9Y256 329 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 ZNF281Q9Y2X9 895 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 A6NL46 340 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 NRG2O14511 850 aaPredicted RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 ST6GAL1P15907 406 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 MAKP20794 623 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 LSM11P83369 360 aaKnown RBP eCLIP17.12■□□□□ 0.336e-12■■■■■ 77.1
USP48-204ENST00000400301 PHF19Q5T6S3 580 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 SLC6A19Q695T7 634 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 FBLIM1Q8WUP2 373 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 MRPL38Q96DV4 380 aaKnown RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 PDCD1LG2Q9BQ51 273 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 CHST2Q9Y4C5 530 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 A0A1B0GVI7 797 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 PHYHO14832 338 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 ZNF264O43296 627 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 CYB5AP00167 134 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 DDOSTP39656 456 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 SLC6A8P48029 635 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 SLC6A9P48067 706 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 KIAA0907Q7Z7F0 614 aaPredicted RBP17.12■□□□□ 0.33
USP48-204ENST00000400301 SLC35F3Q8IY50 421 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 LGALS14Q8TCE9 139 aa17.12■□□□□ 0.33
USP48-204ENST00000400301 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.12■□□□□ 0.33
USP48-204ENST00000400301 DOCK4Q8N1I0 1966 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 B4DXG7 233 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 ARPC1BO15143 372 aaKnown RBP17.11■□□□□ 0.33
USP48-204ENST00000400301 SLC43A1O75387 559 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 GATBO75879 557 aaKnown RBP17.11■□□□□ 0.33
USP48-204ENST00000400301 SEMG1P04279 462 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 LIMS3P0CW19 117 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 LIMS4P0CW20 117 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 HCCSP53701 268 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 RAB11BQ15907 218 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 C9orf50Q5SZB4 431 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 LNX2Q8N448 690 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 RASD2Q96D21 266 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 PATJQ8NI35 1801 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 C5orf51A6NDU8 294 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 MAGEB4O15481 346 aaPredicted RBP17.11■□□□□ 0.33
USP48-204ENST00000400301 OR3A3P47888 321 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 OR3A2P47893 321 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 EVX1P49640 407 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 FBXO42Q6P3S6 717 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 ZNF417Q8TAU3 575 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 Q96M85 177 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 GTPBP2Q9BX10 602 aaKnown RBP17.11■□□□□ 0.33
USP48-204ENST00000400301 ZNF646O15015 1829 aaPredicted RBP17.11■□□□□ 0.33
USP48-204ENST00000400301 A0A1W2PPV9 198 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 CCINQ13939 588 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 MED25Q71SY5 747 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 RASGRP3Q8IV61 690 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 ZFPM2Q8WW38 1151 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 OR2A14Q96R47 310 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 CTRCQ99895 268 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 GON7Q9BXV9 100 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 POTEKPQ9BYX7 375 aa17.11■□□□□ 0.33
USP48-204ENST00000400301 A0A1W2PPL8 197 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 LINC01565O15544 149 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 CFIP05156 583 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 CD38P28907 300 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 E2F1Q01094 437 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 NOX4Q9NPH5 578 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 ADAM18Q9Y3Q7 739 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 MAP1BP46821 2468 aaKnown RBP17.1■□□□□ 0.33
USP48-204ENST00000400301 EFCAB7A8K855 629 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 KDM4EB2RXH2 506 aaPredicted RBP17.1■□□□□ 0.33
USP48-204ENST00000400301 RFPL3O75679 317 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 PCGF3Q3KNV8 242 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 TMEM225Q6GV28 225 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 OR8D4Q8NGM9 314 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 OR6N1Q8NGY5 312 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 BRIX1Q8TDN6 353 aaKnown RBP17.1■□□□□ 0.33
USP48-204ENST00000400301 NRIP3Q9NQ35 241 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 CTSVO60911 334 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 UBL3O95164 117 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 VN1R4Q7Z5H5 301 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 TMEM41AQ96HV5 264 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 UBQLN2Q9UHD9 624 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 SPEF1Q9Y4P9 236 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 HS3ST3A1Q9Y663 406 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 ACOT7O00154 380 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 SLC16A7O60669 478 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 TACR3P29371 465 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 P2RY14Q15391 338 aa17.1■□□□□ 0.33
USP48-204ENST00000400301 MAPK14Q16539 360 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms