RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 OR1M1Q8NGA1 313 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 KATNB1Q9BVA0 655 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 SPACA1Q9HBV2 294 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 SLC6A20Q9NP91 592 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 PLSCR3Q9NRY6 295 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 UGDHO60701 494 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 KLF8O95600 359 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 THBS1P07996 1170 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ACTBL2Q562R1 376 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 PRAMEF8Q5VWM4 474 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 PRAMEF7Q5VXH5 474 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 GTF2H5Q6ZYL4 71 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 IL1RNP18510 177 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ZMAT1Q5H9K5 638 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 RTL6Q6ICC9 239 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 KHSRPQ92945 711 aaKnown RBP eCLIP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 HRASLS5Q96KN8 279 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 DCLRE1CQ96SD1 692 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 MVB12BQ9H7P6 319 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 KCMF1Q9P0J7 381 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SLIT2O94813 1529 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 A0A0A6YYJ9 748 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 PPP5D1E7EU14 171 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ACOT8O14734 319 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 PMS2P2O95744 297 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 HMGN2P05204 90 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 GPR176Q14439 515 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 GKN2Q86XP6 184 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF100Q8IYN0 542 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 CLEC2DQ9UHP7 191 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 PEAK1Q9H792 1746 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 BCKDHBP21953 392 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 NFYBP25208 207 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 EXOSC2Q13868 293 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 TEAD2Q15562 447 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 FAM69BQ5VUD6 431 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 UBE2FQ969M7 185 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 RSPRY1Q96DX4 576 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 HOXD1Q9GZZ0 328 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 FBXO8Q9NRD0 319 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SETD1AO15047 1707 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 FTCDNL1E5RQL4 147 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF587BE7ETH6 402 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 K7ERQ8 282 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 PEX12O00623 359 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 CCSO14618 274 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ANGPTL7O43827 346 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ZIC2O95409 532 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 FBLP22087 321 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SPINT3P49223 89 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 RAB11AP62491 216 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 OR7E24Q6IFN5 339 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 BCDIN3DQ7Z5W3 292 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF680Q8NEM1 530 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 AKR7LQ8NHP1 331 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 GCDHQ92947 438 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 EGLN2Q96KS0 407 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SPO11Q9Y5K1 396 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 MPPED1O15442 326 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 PMP2P02689 132 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SIGIRRQ6IA17 410 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 MDGA2Q7Z553 956 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 MYADMQ96S97 322 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 CMSS1Q9BQ75 279 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SLCO5A1Q9H2Y9 848 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SIDT1Q9NXL6 827 aaKnown RBP11.07□□□□□ -0.64
SYNPO-202ENST00000394243 SLC6A14Q9UN76 642 aa11.07□□□□□ -0.64
SYNPO-202ENST00000394243 A0A0U1RQF3 1178 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM72A0PK05 275 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 MROH6A6NGR9 719 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 UMAD1C9J7I0 102 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 DAP3P51398 398 aaKnown RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 P2RX3P56373 397 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 UBE2IP63279 158 aaKnown RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 GPR17Q13304 367 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 COTL1Q14019 142 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 RNF175Q8N4F7 328 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 SEMA4CQ9C0C4 833 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 NOX4Q9NPH5 578 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 EXOSC3Q9NQT5 275 aaKnown RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 HIF1ANQ9NWT6 349 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 PCDHGA1Q9Y5H4 931 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 OR8G3PP0DMU2 310 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 PLGLAQ15195 96 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 C4orf17Q53FE4 359 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 GPR150Q8NGU9 434 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF384Q8TF68 577 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 SFT2D1Q8WV19 159 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 DEFB126Q9BYW3 111 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 SLC6A17Q9H1V8 727 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 TUBB1Q9H4B7 451 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM269A0A1B0GVZ9 245 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 A6NIZ1 184 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 H3BML4 177 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 SLC16A6O15403 523 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 XRCC3O43542 346 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 NME2P1O60361 137 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 CD80P33681 288 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 XCR1P46094 333 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 CCR9P51686 369 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms