RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 WIPI1Q5MNZ9 446 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-205ENST00000392004 PDSS1Q5T2R2 415 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 LCN10Q6JVE6 187 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 GCNT2Q8N0V5 402 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 TMEM178AQ8NBL3 297 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 IL17RDQ8NFM7 739 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 SNX33Q8WV41 574 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 COQ7Q99807 217 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 SLC30A2Q9BRI3 323 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 C19orf53Q9UNZ5 99 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-205ENST00000392004 SPIN1Q9Y657 262 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-205ENST00000392004 LOC101059948A0A1B0GTJ6 334 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 PRAMEF25A6NGN4 478 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 KLRC4-KLRK1H3BQV0 150 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 ACVR2AP27037 513 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 PPIAP62937 165 aaKnown RBP9.46□□□□□ -0.9
COL6A3-205ENST00000392004 GINS1Q14691 196 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 INPP5JQ15735 1006 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-205ENST00000392004 C3AR1Q16581 482 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 ENTPD8Q5MY95 495 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 FAM180AQ6UWF9 173 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 DGAT2L6Q6ZPD8 337 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 SHFQ7M4L6 423 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 TTYH2Q9BSA4 534 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 EMC6Q9BV81 110 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 NMNAT1Q9HAN9 279 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-205ENST00000392004 ABCG2Q9UNQ0 655 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 FAM183AA6NL82 134 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF891A8MT65 544 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 IGHEP01854 428 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ABCD3P28288 659 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 GDI2P50395 445 aaKnown RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 NDUFAF7Q7L592 441 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF675Q8TD23 568 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ZCCHC14Q8WYQ9 949 aaKnown RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 Q96MT0 163 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 CITED4Q96RK1 184 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 CPPED1Q9BRF8 314 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 CCDC32Q9BV29 185 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 WWTR1Q9GZV5 400 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 KCNN2Q9H2S1 579 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF443Q9Y2A4 671 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 WDFY4Q6ZS81 3184 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 TRANK1O15050 2925 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ZGRF1Q86YA3 2104 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 HMGN4O00479 90 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 FMO6PO60774 539 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 SLITRK5O94991 958 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 FUT1P19526 365 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 HOXD11P31277 338 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 TGFBR2P37173 567 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ERVK-25P63136 954 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 SELENOWP63302 87 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 MC2RQ01718 297 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 QPRTQ15274 297 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 PRTGQ2VWP7 1150 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 FRRS1Q6ZNA5 592 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 Q6ZPB1 254 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 TRILQ7L0X0 811 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 MRGPREQ86SM8 312 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 BPHLQ86WA6 291 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 SUMF1Q8NBK3 374 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 C7orf57Q8NEG2 295 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 NT5CQ8TCD5 201 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 FBLIM1Q8WUP2 373 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 PHF21AQ96BD5 680 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 SLA2Q9H6Q3 261 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ERVK13-1Q9NX77 482 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 DTX4Q9Y2E6 619 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 CCDC182A6NF36 153 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 PCDH17O14917 1159 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 WDPCPO95876 746 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 AK1P00568 194 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 CHRM4P08173 479 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 TSPAN19P0C672 248 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ACP2P11117 423 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 VLDLRP98155 873 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 POU3F1Q03052 451 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 DBPQ10586 325 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 EFR3AQ14156 821 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 OR1Q1Q15612 314 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 FAM181AQ8N9Y4 354 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 UBASH3BQ8TF42 649 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 APOBEC4Q8WW27 367 aaKnown RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 NEURL3Q96EH8 262 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 SGTBQ96EQ0 304 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 RBP7Q96R05 134 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 PIP5K1AQ99755 562 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 UCK2Q9BZX2 261 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 FAM117AQ9C073 453 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 ZC4H2Q9NQZ6 224 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 YARS2Q9Y2Z4 477 aaKnown RBP9.45□□□□□ -0.9
COL6A3-205ENST00000392004 BOLA1Q9Y3E2 137 aa9.45□□□□□ -0.9
COL6A3-205ENST00000392004 TRAPPC13A5PLN9 417 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 LIFP15018 202 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 TSFMP43897 325 aaKnown RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 LGALS3BPQ08380 585 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 SSPNQ14714 243 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 TBCEQ15813 527 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms