RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 PODNL1Q6PEZ8 512 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 PARM1Q6UWI2 310 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 CASP12Q6UXS9 341 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 GDPGP1Q6ZNW5 385 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 MTSS1LQ765P7 747 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 VN1R4Q7Z5H5 301 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 ASPGQ86U10 573 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 COMTD1Q86VU5 262 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 AMIGO1Q86WK6 493 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 TRIM69Q86WT6 500 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 NRROSQ86YC3 692 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 RBM45Q8IUH3 476 aaKnown RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 OR5D16Q8NGK9 328 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 OR8K5Q8NH50 307 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 MCFD2Q8NI22 146 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 VANGL1Q8TAA9 524 aaPredicted RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 SLC7A13Q8TCU3 470 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 GANCQ8TET4 914 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 KLK6Q92876 244 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 FGF11Q92914 225 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 FGF14Q92915 247 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 UCN3Q969E3 161 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 SLC22A18Q96BI1 424 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 GIMAP5Q96F15 307 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 CNRIP1Q96F85 164 aaPredicted RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 TMEM80Q96HE8 168 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 ZNF681Q96N22 645 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 MGLLQ99685 303 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 TRMT61BQ9BVS5 477 aaKnown RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 FNDC11Q9BVV2 318 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 ROGDIQ9GZN7 287 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 POLR2J3Q9H1A7 115 aaKnown RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 TP63Q9H3D4 680 aaPredicted RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 KLHL31Q9H511 634 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 XKR8Q9H6D3 395 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 TRIM45Q9H8W5 580 aaPredicted RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 SIAEQ9HAT2 523 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 ZBTB20Q9HC78 741 aaPredicted RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 SEPSECSQ9HD40 501 aaKnown RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 AMBNQ9NP70 447 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 PRDM8Q9NQV8 689 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 MAN2C1Q9NTJ4 1040 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 SPHK1Q9NYA1 384 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 ANKMY1Q9P2S6 941 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 RHCGQ9UBD6 479 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 APOBEC3BQ9UH17 382 aaKnown RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 PHF11Q9UIL8 331 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.4□□□□□ -1.71
USP48-202ENST00000374730 LIPT1Q9Y234 373 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 CFL2Q9Y281 166 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 LSM2Q9Y333 95 aaKnown RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 RPL36Q9Y3U8 105 aaKnown RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 ATG4BQ9Y4P1 393 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 UGT2A1Q9Y4X1 527 aa4.4□□□□□ -1.71
USP48-202ENST00000374730 MN1Q10571 1320 aaPredicted RBP4.4□□□□□ -1.71
USP48-202ENST00000374730 TMEM131Q92545 1883 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 A0A075B6Q4 140 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 A0A1W2PPH5 198 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 A0A1W2PQF6 199 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 GSAPA4D1B5 854 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CD8B2A6NJW9 211 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 C10orf142B7Z368 130 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 H3BN98 237 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PGRMC2O15173 223 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TNFSF14O43557 240 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 LATO43561 262 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 COQ9O75208 318 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CSO75390 466 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 NME6O75414 186 aaPredicted RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 PRKRAO75569 313 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ERAL1O75616 437 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ACTL6BO94805 426 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 OR5F1O95221 314 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SOX14O95416 240 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 APBB3O95704 486 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SCGB1D1O95968 90 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ALPPP05187 535 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 HMGN2P05204 90 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ADRA2AP08913 450 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SLC35G6P0C7Q6 338 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SMIM10L1P0DMW3 83 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 DBTP11182 482 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ACADMP11310 421 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PSG1P11464 419 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 HOXB2P14652 356 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PORP16435 677 aaPredicted RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ALOX12P18054 663 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CDH3P22223 829 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 MMP11P24347 488 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 POU1F1P28069 291 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 MPIP34949 423 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 IFNGR2P38484 337 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PCYT1AP49585 367 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CCR5P51681 352 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 RPS3AP61247 264 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 EFNB1P98172 346 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CDK5Q00535 292 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 IFITM3Q01628 133 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TNFRSF17Q02223 184 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ZNF45Q02386 682 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms