RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RPS4XP62701 263 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 KCNAB1Q14722 419 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 GRM7Q14831 915 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 PON3Q15166 354 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 QPRTQ15274 297 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 TBRG1Q3YBR2 411 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 LRRC28Q86X40 367 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 SYS1Q8N2H4 156 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 Q8N9G6 341 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 OR4M2Q8NGB6 313 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 CLIP3Q96DZ5 547 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 TTYH2Q9BSA4 534 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 SLC19A3Q9BZV2 496 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 UBQLN4Q9NRR5 601 aa19.06■□□□□ 0.64
CCDC88B-203ENST00000359902 OR6C68A6NDL8 312 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 A8MV72 311 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 MBTPS2O43462 519 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 FAM157BP0CG42 384 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 PRKAR1AP10644 381 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 IGFBP4P22692 258 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 ADH7P40394 386 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 SLC37A1P57057 533 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 ERVK-25P63136 954 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 IFITM2Q01629 132 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 BIKQ13323 160 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 MZT2BQ6NZ67 158 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 GLCCI1Q86VQ1 547 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 SLC35F2Q8IXU6 374 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 TDHQ8IZJ6 230 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 GHDCQ8N2G8 530 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 DUSP18Q8NEJ0 188 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 OR14A16Q8NHC5 309 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 TP53INP1Q96A56 240 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 CHRDQ9H2X0 955 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 CCDC86Q9H6F5 360 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 PNO1Q9NRX1 252 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 A0A1W2PRG6 482 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 LYRM1O43325 122 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 EIF4EP06730 217 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 ACTA2P62736 377 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 RACK1P63244 317 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 ACTG2P63267 376 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 LGALS3BPQ08380 585 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 CDONQ4KMG0 1287 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 WBP2NLQ6ICG8 309 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 PLET1Q6UQ28 207 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 SAMD12Q8N8I0 201 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 ZPLD1Q8TCW7 415 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 NMNAT2Q9BZQ4 307 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 KLHL1Q9NR64 748 aa19.05■□□□□ 0.64
CCDC88B-203ENST00000359902 PPICP45877 212 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 TDGQ13569 410 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 SF3A2Q15428 464 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 ISXQ2M1V0 245 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 SLC25A35Q3KQZ1 300 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 OGFOD3Q6PK18 319 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 APOOLQ6UXV4 268 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 OR4M1Q8NGD0 313 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 MOSPD2Q8NHP6 518 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 SLC7A6Q92536 515 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 RASD2Q96D21 266 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 EPHA6Q9UF33 1036 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 NUFIP1Q9UHK0 495 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 CA14Q9ULX7 337 aa19.04■□□□□ 0.64
CCDC88B-203ENST00000359902 ELOA3DA6NLF2 546 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 LMO7DNF2Z398 122 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 IL33O95760 270 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 PSKH1P11801 424 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SPI1P17947 270 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 OR1D4P47884 311 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 GBX2P52951 348 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SIRPAP78324 504 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SKP2Q13309 424 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 CDK5R1Q15078 307 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SF3B4Q15427 424 aaKnown RBP eCLIP19.03■□□□□ 0.646e-9■■□□□ 13.6
CCDC88B-203ENST00000359902 ELOA3BQ3SY89 546 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 CBLN3Q6UW01 205 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 TTLL10Q6ZVT0 673 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 ATG4DQ86TL0 474 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 ELOA3Q8NG57 546 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 PHOSPHO1Q8TCT1 267 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 CAPSLQ8WWF8 208 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 THAP4Q8WY91 577 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SMIM19Q96E16 107 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 ZDHHC12Q96GR4 267 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 RAB33BQ9H082 229 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 NXF5Q9H1B4 397 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 CUTCQ9NTM9 273 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 A8MUA0 341 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 H3BMH7 237 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 IDH3BO43837 385 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SDC3O75056 442 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 PAHP00439 452 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 PNMTP11086 282 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 UBL4AP11441 157 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 HPGDP15428 266 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 NPR2P20594 1047 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 GDI2P50395 445 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 PRPS1P60891 318 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 BCL2A1Q16548 175 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms