RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CDKN2CP42773 168 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 CRYBB2P43320 205 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 BTN3A2P78410 334 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 HSD11B2P80365 405 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 PLA2G7Q13093 441 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 NTRK2Q16620 822 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 GUCA2BQ16661 112 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 SFRP4Q6FHJ7 346 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-203ENST00000354674 TCEAL6Q6IPX3 200 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 TMEM71Q6P5X7 295 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 WDR53Q7Z5U6 358 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-203ENST00000354674 HSH2DQ96JZ2 352 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 SIGLEC11Q96RL6 698 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 TSNAXQ99598 290 aaKnown RBP9.32□□□□□ -0.92
SYNE1-203ENST00000354674 NLNQ9BYT8 704 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 TXNL4BQ9NX01 149 aaKnown RBP9.32□□□□□ -0.92
SYNE1-203ENST00000354674 CES1P1Q9UKY3 287 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 MRPS2Q9Y399 296 aaKnown RBP9.32□□□□□ -0.92
SYNE1-203ENST00000354674 ATG4BQ9Y4P1 393 aa9.32□□□□□ -0.92
SYNE1-203ENST00000354674 A0A1W2PQM1 296 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 LNP1A1A4G5 178 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 WDPCPO95876 746 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 FABP3P05413 133 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 UCHL1P09936 223 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 GCGRP47871 477 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 POU3F4P49335 361 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CDH12P55289 794 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 PCBP4P57723 403 aaKnown RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 POU4F2Q12837 409 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 SPHARQ15513 63 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 AMZ1Q400G9 498 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 ZNF574Q6ZN55 896 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 SSX9Q7RTT3 188 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 BPIFCQ8NFQ6 507 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 SLC38A2Q96QD8 506 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 VRK1Q99986 396 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 DPYSL5Q9BPU6 564 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CCDC3Q9BQI4 270 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 PTDSS2Q9BVG9 487 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 ARL6Q9H0F7 186 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 LYRM4Q9HD34 91 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 ZNF318Q5VUA4 2279 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 C1orf226A1L170 272 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 PRR23D1E9PI22 279 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 RFXANKO14593 260 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 GPR171O14626 319 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CASC3O15234 703 aaKnown RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 GALR3O60755 368 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 SEMA7AO75326 666 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 LALBAP00709 142 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 HEXBP07686 556 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 HBQ1P09105 142 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 PRR23D2P0DMB1 279 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 GABRB1P18505 474 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 ZNF10P21506 573 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 NFYBP25208 207 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 MAGEA2P43356 314 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 EEF1A1P68104 462 aaKnown RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CCL7P80098 99 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 EEF1A2Q05639 463 aaKnown RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 MLC1Q15049 377 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CEBPEQ15744 281 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 DEFB110Q30KQ9 67 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 EEF1A1P5Q5VTE0 462 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 LRRN1Q6UXK5 716 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 SSX6Q7RTT6 188 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CLECL1Q8IZS7 167 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 OR4D9Q8NGE8 314 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CPNE2Q96FN4 548 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 MAPKAP1Q9BPZ7 522 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 CPPED1Q9BRF8 314 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 NUDT22Q9BRQ3 303 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 TMED9Q9BVK6 235 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 FAIM2Q9BWQ8 316 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 LRRN3Q9H3W5 708 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 GORASP2Q9H8Y8 452 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 DLL4Q9NR61 685 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 PURGQ9UJV8 347 aaKnown RBP9.31□□□□□ -0.92
SYNE1-203ENST00000354674 ENTPD4Q9Y227 616 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 TTC28Q96AY4 2481 aa9.31□□□□□ -0.92
SYNE1-203ENST00000354674 FXYD6-FXYD2A0A087WZ82 144 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 J3KTA2 159 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 ENTPD6O75354 484 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 CSO75390 466 aaKnown RBP9.3□□□□□ -0.92
SYNE1-203ENST00000354674 MT-ND4P03905 459 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 DUSP3P51452 185 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-203ENST00000354674 PGDP52209 483 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 UBE2MP61081 183 aaKnown RBP9.3□□□□□ -0.92
SYNE1-203ENST00000354674 RPS25P62851 125 aaKnown RBP9.3□□□□□ -0.92
SYNE1-203ENST00000354674 PRR5P85299 388 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 DEFA6Q01524 100 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 RUNX2Q13950 521 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 TGIF1Q15583 401 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 CDPF1Q6NVV7 123 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 SLC27A4Q6P1M0 643 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 USP53Q70EK8 1073 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 RAB11FIP2Q7L804 512 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 MAMDC2Q7Z304 686 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-203ENST00000354674 SLC25A28Q96A46 364 aa9.3□□□□□ -0.92
SYNE1-203ENST00000354674 C10orf90Q96M02 699 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms